- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.81 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 4 residues within 4Å:- Chain A: G.1, F.2, K.3, D.116
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:G.1, A:F.2, A:K.3, A:D.116
- Water bridges: A:Q.4, A:S.119, A:S.119
SO4.3: 3 residues within 4Å:- Chain A: K.32, V.39, G.40
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.40
- Water bridges: A:K.32, A:K.32
- Salt bridges: A:K.32
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
- 7 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 6 residues within 4Å:- Chain A: Q.4, D.5, T.8, Q.113, S.114, F.115
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.5, A:T.8, A:S.114
- Water bridges: A:D.116
GOL.6: 7 residues within 4Å:- Chain A: R.10, E.65, D.68, R.69
- Chain B: I.6, A.7, R.10
7 PLIP interactions:3 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:R.10, A:R.10, A:R.10, A:D.68, A:R.69
- Water bridges: B:A.7, B:A.7
GOL.7: 7 residues within 4Å:- Chain A: E.98, F.101, V.102, W.120, D.121, G.124, K.125
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.125, A:K.125, A:K.125
GOL.8: 6 residues within 4Å:- Chain A: K.3, I.6, A.7, R.10, D.68
- Chain B: E.65
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:A.7, A:R.10, A:D.68, B:E.65
GOL.9: 5 residues within 4Å:- Chain A: K.51, D.54, H.55, K.58
- Ligands: HEM.1
No protein-ligand interaction detected (PLIP)GOL.12: 6 residues within 4Å:- Chain B: Q.4, D.5, T.8, Q.113, S.114, F.115
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:Q.4, B:D.5, B:Q.113, B:S.114
- Water bridges: B:S.114, B:S.114, B:D.116
GOL.13: 5 residues within 4Å:- Chain A: L.62, E.65, R.69
- Chain B: Q.4, A.7
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:E.65, A:R.69, A:R.69, B:Q.4, B:Q.4
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Carey, L.M. et al., How nature tunes isoenzyme activity in the multifunctional catalytic globin dehaloperoxidase from Amphitrite ornata. Biochim Biophys Acta Proteins Proteom (2018)
- Release Date
- 2018-03-21
- Peptides
- Dehaloperoxidase B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 5v5j.1
oxyferrous Dehaloperoxidase B
Dehaloperoxidase B
Toggle Identical (AB)Related Entries With Identical Sequence
3ixf.1 | 3ixf.2 | 5chq.1 | 5chq.2 | 5chr.1 | 5chr.2 | 5k1l.1 | 5lk9.1 | 5lkv.1 | 5llz.1 | 6ch5.1 | 6ch5.2 | 6ch6.1 | 6ch6.2 | 6cke.1 | 6co5.1 | 6co5.2 | 6cre.1 | 6i6g.1 | 6i7f.1 | 6ong.1 | 6ong.2 | 6onk.1 | 6onk.2 | 6onr.1 | 6onr.2 | 6onx.1 | 6onx.2 | 6onz.1 | 6onz.2 more...less...6oo1.1 | 6oo1.2 | 6oo6.1 | 6oo6.2 | 6oo8.1 | 6oo8.2 | 6vd3.1 | 6vd3.2 | 6vd4.1 | 6vd4.2 | 6vd5.1 | 6vd5.2 | 6vd6.1 | 6vd6.2 | 6vdr.1 | 6vdr.2 | 6vds.1 | 6vds.2 | 6vdt.1 | 6vdt.2 | 6vdu.1 | 6vdu.2 | 6vdv.1 | 6vdv.2 | 6vdw.1 | 6vdw.2 | 6vdx.1 | 6vdx.2 | 6vdy.1 | 6vdy.2 | 7jor.1 | 7jor.2 | 7kcu.1 | 7kcu.2 | 7kfm.1 | 7lzk.1 | 7lzk.2 | 7lzn.1 | 7lzn.2 | 7lzo.1 | 7lzo.2 | 7m0f.1 | 7m0f.2 | 7m0h.1 | 7m0h.2 | 7m1i.1 | 7m1i.2 | 7m1j.1 | 7m1j.2 | 7m1k.1 | 7m1k.2 | 7sjb.1 | 7sjb.2 | 7sjc.1 | 7sjc.2 | 7sjd.1 | 7sjd.2 | 7sje.1 | 7sje.2 | 7sjf.1 | 7sjf.2 | 7sjg.1 | 7sjg.2 | 7sjh.1 | 7sjh.2 | 7sji.1 | 7sji.2 | 7t9c.1 | 7t9c.2 | 7t9d.1 | 7t9d.2 | 7t9e.1 | 7t9e.2 | 8dog.1 | 8dog.2 | 8doh.1 | 8doh.2 | 8doi.1 | 8doi.2 | 8doj.1 | 8doj.2