SMTL ID : 5wgb.1

Crystal Structure of the Human mitochondrial Cysteine Desulfurase in complex with ISD11 and E. coli ACP1 protein at 2.75A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 12 residues within 4Å: Chain A: G.95, A.96, T.97, N.100, H.125, D.201, A.203, Q.204, S.224, H.226, K.227, K.232 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:A.96, A:A.203, A:K.227 Hydrogen bonds: A:A.96, A:T.97, A:T.97, A:N.100, A:Q.204, A:S.224, A:S.224 Salt bridges: A:H.226, A:K.227, A:K.232 pi-Stacking: A:H.125

1 x 8Q1: S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate(Covalent)

8Q1.2: 16 residues within 4Å: Chain A: P.40, R.41 Chain B: R.6, Y.31, R.35, I.36, A.39, F.40, N.43, K.44, V.46, I.52, L.55, D.62, I.66 Chain C: S.36 12 PLIP interactions: 10 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: B:Y.31, B:Y.31, B:R.35, B:I.36, B:A.39, B:F.40, B:K.44, B:I.52, B:I.66, A:P.40 Salt bridges: B:K.44 Hydrogen bonds: C:S.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boniecki, M.T. et al., Structure and functional dynamics of the mitochondrial Fe/S cluster synthesis complex. Nat Commun (2017)

Release Date

2017-07-26

Peptides

Cysteine desulfurase, mitochondrial: A
LYR motif-containing protein 4: B
Acyl carrier protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Cysteine desulfurase, mitochondrial

LYR motif-containing protein 4

Acyl carrier protein

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