- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- homo-24-mer
- Ligands
- 24 x CWM: 2-methyl-1H-benzimidazol-7-ol(Non-covalent)
- 60 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 2 residues within 4Å:- Chain A: S.121, K.122
Ligand excluded by PLIPSO4.3: 5 residues within 4Å:- Chain A: H.18, R.91, S.128, S.129
- Ligands: PEG.5
Ligand excluded by PLIPSO4.8: 2 residues within 4Å:- Chain B: S.121, K.122
Ligand excluded by PLIPSO4.9: 5 residues within 4Å:- Chain B: H.18, R.91, S.128, S.129
- Ligands: PEG.11
Ligand excluded by PLIPSO4.14: 2 residues within 4Å:- Chain C: S.121, K.122
Ligand excluded by PLIPSO4.15: 5 residues within 4Å:- Chain C: H.18, R.91, S.128, S.129
- Ligands: PEG.17
Ligand excluded by PLIPSO4.20: 2 residues within 4Å:- Chain D: S.121, K.122
Ligand excluded by PLIPSO4.21: 5 residues within 4Å:- Chain D: H.18, R.91, S.128, S.129
- Ligands: PEG.23
Ligand excluded by PLIPSO4.26: 2 residues within 4Å:- Chain E: S.121, K.122
Ligand excluded by PLIPSO4.27: 5 residues within 4Å:- Chain E: H.18, R.91, S.128, S.129
- Ligands: PEG.29
Ligand excluded by PLIPSO4.32: 2 residues within 4Å:- Chain F: S.121, K.122
Ligand excluded by PLIPSO4.33: 5 residues within 4Å:- Chain F: H.18, R.91, S.128, S.129
- Ligands: PEG.35
Ligand excluded by PLIPSO4.38: 2 residues within 4Å:- Chain G: S.121, K.122
Ligand excluded by PLIPSO4.39: 5 residues within 4Å:- Chain G: H.18, R.91, S.128, S.129
- Ligands: PEG.41
Ligand excluded by PLIPSO4.44: 2 residues within 4Å:- Chain H: S.121, K.122
Ligand excluded by PLIPSO4.45: 5 residues within 4Å:- Chain H: H.18, R.91, S.128, S.129
- Ligands: PEG.47
Ligand excluded by PLIPSO4.50: 2 residues within 4Å:- Chain I: S.121, K.122
Ligand excluded by PLIPSO4.51: 5 residues within 4Å:- Chain I: H.18, R.91, S.128, S.129
- Ligands: PEG.53
Ligand excluded by PLIPSO4.56: 2 residues within 4Å:- Chain J: S.121, K.122
Ligand excluded by PLIPSO4.57: 5 residues within 4Å:- Chain J: H.18, R.91, S.128, S.129
- Ligands: PEG.59
Ligand excluded by PLIPSO4.62: 2 residues within 4Å:- Chain K: S.121, K.122
Ligand excluded by PLIPSO4.63: 5 residues within 4Å:- Chain K: H.18, R.91, S.128, S.129
- Ligands: PEG.65
Ligand excluded by PLIPSO4.68: 2 residues within 4Å:- Chain L: S.121, K.122
Ligand excluded by PLIPSO4.69: 5 residues within 4Å:- Chain L: H.18, R.91, S.128, S.129
- Ligands: PEG.71
Ligand excluded by PLIPSO4.74: 5 residues within 4Å:- Chain M: S.39, P.40, S.41
- Chain W: R.137, H.138
Ligand excluded by PLIPSO4.75: 5 residues within 4Å:- Chain M: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPSO4.76: 2 residues within 4Å:- Chain M: S.121, K.122
Ligand excluded by PLIPSO4.80: 5 residues within 4Å:- Chain N: S.39, P.40, S.41
- Chain V: R.137, H.138
Ligand excluded by PLIPSO4.81: 5 residues within 4Å:- Chain N: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPSO4.82: 2 residues within 4Å:- Chain N: S.121, K.122
Ligand excluded by PLIPSO4.86: 5 residues within 4Å:- Chain O: S.39, P.40, S.41
- Chain X: R.137, H.138
Ligand excluded by PLIPSO4.87: 5 residues within 4Å:- Chain O: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPSO4.88: 2 residues within 4Å:- Chain O: S.121, K.122
Ligand excluded by PLIPSO4.92: 5 residues within 4Å:- Chain P: S.39, P.40, S.41
- Chain U: R.137, H.138
Ligand excluded by PLIPSO4.93: 5 residues within 4Å:- Chain P: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPSO4.94: 2 residues within 4Å:- Chain P: S.121, K.122
Ligand excluded by PLIPSO4.98: 5 residues within 4Å:- Chain O: R.137, H.138
- Chain Q: S.39, P.40, S.41
Ligand excluded by PLIPSO4.99: 5 residues within 4Å:- Chain Q: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPSO4.100: 2 residues within 4Å:- Chain Q: S.121, K.122
Ligand excluded by PLIPSO4.104: 5 residues within 4Å:- Chain N: R.137, H.138
- Chain R: S.39, P.40, S.41
Ligand excluded by PLIPSO4.105: 5 residues within 4Å:- Chain R: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPSO4.106: 2 residues within 4Å:- Chain R: S.121, K.122
Ligand excluded by PLIPSO4.110: 5 residues within 4Å:- Chain P: R.137, H.138
- Chain S: S.39, P.40, S.41
Ligand excluded by PLIPSO4.111: 5 residues within 4Å:- Chain S: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPSO4.112: 2 residues within 4Å:- Chain S: S.121, K.122
Ligand excluded by PLIPSO4.116: 5 residues within 4Å:- Chain M: R.137, H.138
- Chain T: S.39, P.40, S.41
Ligand excluded by PLIPSO4.117: 5 residues within 4Å:- Chain T: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPSO4.118: 2 residues within 4Å:- Chain T: S.121, K.122
Ligand excluded by PLIPSO4.122: 5 residues within 4Å:- Chain S: R.137, H.138
- Chain U: S.39, P.40, S.41
Ligand excluded by PLIPSO4.123: 5 residues within 4Å:- Chain U: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPSO4.124: 2 residues within 4Å:- Chain U: S.121, K.122
Ligand excluded by PLIPSO4.128: 5 residues within 4Å:- Chain R: R.137, H.138
- Chain V: S.39, P.40, S.41
Ligand excluded by PLIPSO4.129: 5 residues within 4Å:- Chain V: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPSO4.130: 2 residues within 4Å:- Chain V: S.121, K.122
Ligand excluded by PLIPSO4.134: 5 residues within 4Å:- Chain T: R.137, H.138
- Chain W: S.39, P.40, S.41
Ligand excluded by PLIPSO4.135: 5 residues within 4Å:- Chain W: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPSO4.136: 2 residues within 4Å:- Chain W: S.121, K.122
Ligand excluded by PLIPSO4.140: 5 residues within 4Å:- Chain Q: R.137, H.138
- Chain X: S.39, P.40, S.41
Ligand excluded by PLIPSO4.141: 5 residues within 4Å:- Chain X: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPSO4.142: 2 residues within 4Å:- Chain X: S.121, K.122
Ligand excluded by PLIP- 36 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.4: 3 residues within 4Å:- Chain A: R.4, Q.81, H.82
Ligand excluded by PLIPPEG.5: 5 residues within 4Å:- Chain A: Y.7, I.21, R.88, G.89
- Ligands: SO4.3
Ligand excluded by PLIPPEG.10: 3 residues within 4Å:- Chain B: R.4, Q.81, H.82
Ligand excluded by PLIPPEG.11: 5 residues within 4Å:- Chain B: Y.7, I.21, R.88, G.89
- Ligands: SO4.9
Ligand excluded by PLIPPEG.16: 3 residues within 4Å:- Chain C: R.4, Q.81, H.82
Ligand excluded by PLIPPEG.17: 5 residues within 4Å:- Chain C: Y.7, I.21, R.88, G.89
- Ligands: SO4.15
Ligand excluded by PLIPPEG.22: 3 residues within 4Å:- Chain D: R.4, Q.81, H.82
Ligand excluded by PLIPPEG.23: 5 residues within 4Å:- Chain D: Y.7, I.21, R.88, G.89
- Ligands: SO4.21
Ligand excluded by PLIPPEG.28: 3 residues within 4Å:- Chain E: R.4, Q.81, H.82
Ligand excluded by PLIPPEG.29: 5 residues within 4Å:- Chain E: Y.7, I.21, R.88, G.89
- Ligands: SO4.27
Ligand excluded by PLIPPEG.34: 3 residues within 4Å:- Chain F: R.4, Q.81, H.82
Ligand excluded by PLIPPEG.35: 5 residues within 4Å:- Chain F: Y.7, I.21, R.88, G.89
- Ligands: SO4.33
Ligand excluded by PLIPPEG.40: 3 residues within 4Å:- Chain G: R.4, Q.81, H.82
Ligand excluded by PLIPPEG.41: 5 residues within 4Å:- Chain G: Y.7, I.21, R.88, G.89
- Ligands: SO4.39
Ligand excluded by PLIPPEG.46: 3 residues within 4Å:- Chain H: R.4, Q.81, H.82
Ligand excluded by PLIPPEG.47: 5 residues within 4Å:- Chain H: Y.7, I.21, R.88, G.89
- Ligands: SO4.45
Ligand excluded by PLIPPEG.52: 3 residues within 4Å:- Chain I: R.4, Q.81, H.82
Ligand excluded by PLIPPEG.53: 5 residues within 4Å:- Chain I: Y.7, I.21, R.88, G.89
- Ligands: SO4.51
Ligand excluded by PLIPPEG.58: 3 residues within 4Å:- Chain J: R.4, Q.81, H.82
Ligand excluded by PLIPPEG.59: 5 residues within 4Å:- Chain J: Y.7, I.21, R.88, G.89
- Ligands: SO4.57
Ligand excluded by PLIPPEG.64: 3 residues within 4Å:- Chain K: R.4, Q.81, H.82
Ligand excluded by PLIPPEG.65: 5 residues within 4Å:- Chain K: Y.7, I.21, R.88, G.89
- Ligands: SO4.63
Ligand excluded by PLIPPEG.70: 3 residues within 4Å:- Chain L: R.4, Q.81, H.82
Ligand excluded by PLIPPEG.71: 5 residues within 4Å:- Chain L: Y.7, I.21, R.88, G.89
- Ligands: SO4.69
Ligand excluded by PLIPPEG.77: 6 residues within 4Å:- Chain M: Y.7, P.8, G.9, R.88, G.89
- Ligands: POP.78
Ligand excluded by PLIPPEG.83: 6 residues within 4Å:- Chain N: Y.7, P.8, G.9, R.88, G.89
- Ligands: POP.84
Ligand excluded by PLIPPEG.89: 6 residues within 4Å:- Chain O: Y.7, P.8, G.9, R.88, G.89
- Ligands: POP.90
Ligand excluded by PLIPPEG.95: 6 residues within 4Å:- Chain P: Y.7, P.8, G.9, R.88, G.89
- Ligands: POP.96
Ligand excluded by PLIPPEG.101: 6 residues within 4Å:- Chain Q: Y.7, P.8, G.9, R.88, G.89
- Ligands: POP.102
Ligand excluded by PLIPPEG.107: 6 residues within 4Å:- Chain R: Y.7, P.8, G.9, R.88, G.89
- Ligands: POP.108
Ligand excluded by PLIPPEG.113: 6 residues within 4Å:- Chain S: Y.7, P.8, G.9, R.88, G.89
- Ligands: POP.114
Ligand excluded by PLIPPEG.119: 6 residues within 4Å:- Chain T: Y.7, P.8, G.9, R.88, G.89
- Ligands: POP.120
Ligand excluded by PLIPPEG.125: 6 residues within 4Å:- Chain U: Y.7, P.8, G.9, R.88, G.89
- Ligands: POP.126
Ligand excluded by PLIPPEG.131: 6 residues within 4Å:- Chain V: Y.7, P.8, G.9, R.88, G.89
- Ligands: POP.132
Ligand excluded by PLIPPEG.137: 6 residues within 4Å:- Chain W: Y.7, P.8, G.9, R.88, G.89
- Ligands: POP.138
Ligand excluded by PLIPPEG.143: 6 residues within 4Å:- Chain X: Y.7, P.8, G.9, R.88, G.89
- Ligands: POP.144
Ligand excluded by PLIP- 12 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 3 residues within 4Å:- Chain A: H.138
- Chain K: P.40, S.41
Ligand excluded by PLIPCL.12: 3 residues within 4Å:- Chain B: H.138
- Chain J: P.40, S.41
Ligand excluded by PLIPCL.18: 3 residues within 4Å:- Chain C: H.138
- Chain L: P.40, S.41
Ligand excluded by PLIPCL.24: 3 residues within 4Å:- Chain D: H.138
- Chain I: P.40, S.41
Ligand excluded by PLIPCL.30: 3 residues within 4Å:- Chain C: P.40, S.41
- Chain E: H.138
Ligand excluded by PLIPCL.36: 3 residues within 4Å:- Chain B: P.40, S.41
- Chain F: H.138
Ligand excluded by PLIPCL.42: 3 residues within 4Å:- Chain D: P.40, S.41
- Chain G: H.138
Ligand excluded by PLIPCL.48: 3 residues within 4Å:- Chain A: P.40, S.41
- Chain H: H.138
Ligand excluded by PLIPCL.54: 3 residues within 4Å:- Chain G: P.40, S.41
- Chain I: H.138
Ligand excluded by PLIPCL.60: 3 residues within 4Å:- Chain F: P.40, S.41
- Chain J: H.138
Ligand excluded by PLIPCL.66: 3 residues within 4Å:- Chain H: P.40, S.41
- Chain K: H.138
Ligand excluded by PLIPCL.72: 3 residues within 4Å:- Chain E: P.40, S.41
- Chain L: H.138
Ligand excluded by PLIP- 12 x POP: PYROPHOSPHATE 2-(Non-covalent)
POP.78: 8 residues within 4Å:- Chain M: G.9, T.10, F.11, H.18, R.91, S.128, S.129
- Ligands: PEG.77
10 PLIP interactions:10 interactions with chain M- Hydrogen bonds: M:T.10, M:F.11, M:S.129
- Water bridges: M:D.12, M:K.42, M:S.129, M:S.130
- Salt bridges: M:H.18, M:H.18, M:R.91
POP.84: 8 residues within 4Å:- Chain N: G.9, T.10, F.11, H.18, R.91, S.128, S.129
- Ligands: PEG.83
10 PLIP interactions:10 interactions with chain N- Hydrogen bonds: N:T.10, N:F.11, N:S.129
- Water bridges: N:D.12, N:K.42, N:S.129, N:S.130
- Salt bridges: N:H.18, N:H.18, N:R.91
POP.90: 8 residues within 4Å:- Chain O: G.9, T.10, F.11, H.18, R.91, S.128, S.129
- Ligands: PEG.89
11 PLIP interactions:11 interactions with chain O- Hydrogen bonds: O:T.10, O:F.11, O:S.129
- Water bridges: O:T.10, O:D.12, O:K.42, O:S.129, O:S.130
- Salt bridges: O:H.18, O:H.18, O:R.91
POP.96: 8 residues within 4Å:- Chain P: G.9, T.10, F.11, H.18, R.91, S.128, S.129
- Ligands: PEG.95
11 PLIP interactions:11 interactions with chain P- Hydrogen bonds: P:T.10, P:F.11, P:S.129
- Water bridges: P:T.10, P:D.12, P:K.42, P:S.129, P:S.130
- Salt bridges: P:H.18, P:H.18, P:R.91
POP.102: 8 residues within 4Å:- Chain Q: G.9, T.10, F.11, H.18, R.91, S.128, S.129
- Ligands: PEG.101
11 PLIP interactions:11 interactions with chain Q- Hydrogen bonds: Q:T.10, Q:F.11, Q:S.129
- Water bridges: Q:T.10, Q:D.12, Q:K.42, Q:S.129, Q:S.130
- Salt bridges: Q:H.18, Q:H.18, Q:R.91
POP.108: 8 residues within 4Å:- Chain R: G.9, T.10, F.11, H.18, R.91, S.128, S.129
- Ligands: PEG.107
10 PLIP interactions:10 interactions with chain R- Hydrogen bonds: R:T.10, R:F.11, R:S.129
- Water bridges: R:D.12, R:K.42, R:S.129, R:S.130
- Salt bridges: R:H.18, R:H.18, R:R.91
POP.114: 8 residues within 4Å:- Chain S: G.9, T.10, F.11, H.18, R.91, S.128, S.129
- Ligands: PEG.113
11 PLIP interactions:11 interactions with chain S- Hydrogen bonds: S:T.10, S:F.11, S:S.129
- Water bridges: S:T.10, S:D.12, S:K.42, S:S.129, S:S.130
- Salt bridges: S:H.18, S:H.18, S:R.91
POP.120: 8 residues within 4Å:- Chain T: G.9, T.10, F.11, H.18, R.91, S.128, S.129
- Ligands: PEG.119
10 PLIP interactions:10 interactions with chain T- Hydrogen bonds: T:T.10, T:F.11, T:S.129
- Water bridges: T:D.12, T:K.42, T:S.129, T:S.130
- Salt bridges: T:H.18, T:H.18, T:R.91
POP.126: 8 residues within 4Å:- Chain U: G.9, T.10, F.11, H.18, R.91, S.128, S.129
- Ligands: PEG.125
10 PLIP interactions:10 interactions with chain U- Hydrogen bonds: U:T.10, U:F.11, U:S.129
- Water bridges: U:D.12, U:K.42, U:S.129, U:S.130
- Salt bridges: U:H.18, U:H.18, U:R.91
POP.132: 8 residues within 4Å:- Chain V: G.9, T.10, F.11, H.18, R.91, S.128, S.129
- Ligands: PEG.131
11 PLIP interactions:11 interactions with chain V- Hydrogen bonds: V:T.10, V:F.11, V:S.129
- Water bridges: V:T.10, V:D.12, V:K.42, V:S.129, V:S.130
- Salt bridges: V:H.18, V:H.18, V:R.91
POP.138: 8 residues within 4Å:- Chain W: G.9, T.10, F.11, H.18, R.91, S.128, S.129
- Ligands: PEG.137
11 PLIP interactions:11 interactions with chain W- Hydrogen bonds: W:T.10, W:F.11, W:S.129
- Water bridges: W:T.10, W:D.12, W:K.42, W:S.129, W:S.130
- Salt bridges: W:H.18, W:H.18, W:R.91
POP.144: 8 residues within 4Å:- Chain X: G.9, T.10, F.11, H.18, R.91, S.128, S.129
- Ligands: PEG.143
10 PLIP interactions:10 interactions with chain X- Hydrogen bonds: X:T.10, X:F.11, X:S.129
- Water bridges: X:D.12, X:K.42, X:S.129, X:S.130
- Salt bridges: X:H.18, X:H.18, X:R.91
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Proudfoot, A. et al., High-Confidence Protein-Ligand Complex Modeling by NMR-Guided Docking Enables Early Hit Optimization. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-12-27
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
BN
BO
BP
BQ
BR
BS
BT
BU
BV
BW
BX
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- homo-24-mer
- Ligands
- 24 x CWM: 2-methyl-1H-benzimidazol-7-ol(Non-covalent)
- 60 x SO4: SULFATE ION(Non-functional Binders)
- 36 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
- 12 x POP: PYROPHOSPHATE 2-(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Proudfoot, A. et al., High-Confidence Protein-Ligand Complex Modeling by NMR-Guided Docking Enables Early Hit Optimization. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-12-27
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
BN
BO
BP
BQ
BR
BS
BT
BU
BV
BW
BX
B