- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CWJ: 5-methoxy-2-methyl-1H-indole(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 5 residues within 4Å:- Chain A: P.120, S.121, K.122
- Chain B: H.104, R.107
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Water bridges: B:H.104, A:K.122
- Salt bridges: B:H.104, B:R.107, A:K.122
- Hydrogen bonds: A:K.122
SO4.3: 4 residues within 4Å:- Chain A: H.18, R.91, S.128, S.129
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:S.129
- Water bridges: A:S.128, A:S.129, A:S.130
- Salt bridges: A:H.18, A:R.91
SO4.6: 5 residues within 4Å:- Chain A: H.104, R.107
- Chain B: R.24, S.121, K.122
8 PLIP interactions:4 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:R.24, B:S.121, B:K.122
- Salt bridges: B:K.122, A:H.104, A:R.107
- Water bridges: A:H.104, A:H.108
SO4.7: 5 residues within 4Å:- Chain B: S.39, P.40, S.41
- Chain D: R.137, H.138
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain D- Hydrogen bonds: B:S.39, B:S.41, B:S.41, B:S.41
- Salt bridges: D:R.137, D:H.138
SO4.11: 5 residues within 4Å:- Chain C: P.120, S.121, K.122
- Chain D: H.104, R.107
6 PLIP interactions:3 interactions with chain D, 3 interactions with chain C- Water bridges: D:H.104, C:K.122
- Salt bridges: D:H.104, D:R.107, C:K.122
- Hydrogen bonds: C:K.122
SO4.12: 4 residues within 4Å:- Chain C: H.18, R.91, S.128, S.129
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:S.129
- Water bridges: C:S.128, C:S.129, C:S.130
- Salt bridges: C:H.18, C:R.91
SO4.15: 5 residues within 4Å:- Chain C: H.104, R.107
- Chain D: R.24, S.121, K.122
8 PLIP interactions:4 interactions with chain C, 4 interactions with chain D- Water bridges: C:H.104, C:H.108
- Salt bridges: C:H.104, C:R.107, D:K.122
- Hydrogen bonds: D:R.24, D:S.121, D:K.122
SO4.16: 5 residues within 4Å:- Chain D: S.39, P.40, S.41
- Chain F: R.137, H.138
6 PLIP interactions:2 interactions with chain F, 4 interactions with chain D- Salt bridges: F:R.137, F:H.138
- Hydrogen bonds: D:S.39, D:S.41, D:S.41, D:S.41
SO4.20: 5 residues within 4Å:- Chain E: P.120, S.121, K.122
- Chain F: H.104, R.107
6 PLIP interactions:3 interactions with chain F, 3 interactions with chain E- Water bridges: F:H.104, E:K.122
- Salt bridges: F:H.104, F:R.107, E:K.122
- Hydrogen bonds: E:K.122
SO4.21: 4 residues within 4Å:- Chain E: H.18, R.91, S.128, S.129
6 PLIP interactions:6 interactions with chain E- Hydrogen bonds: E:S.129
- Water bridges: E:S.128, E:S.129, E:S.130
- Salt bridges: E:H.18, E:R.91
SO4.24: 5 residues within 4Å:- Chain E: H.104, R.107
- Chain F: R.24, S.121, K.122
8 PLIP interactions:4 interactions with chain E, 4 interactions with chain F- Water bridges: E:H.104, E:H.108
- Salt bridges: E:H.104, E:R.107, F:K.122
- Hydrogen bonds: F:R.24, F:S.121, F:K.122
SO4.25: 5 residues within 4Å:- Chain B: R.137, H.138
- Chain F: S.39, P.40, S.41
6 PLIP interactions:2 interactions with chain B, 4 interactions with chain F- Salt bridges: B:R.137, B:H.138
- Hydrogen bonds: F:S.39, F:S.41, F:S.41, F:S.41
- 6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.4: 5 residues within 4Å:- Chain A: L.73, L.102, N.106
- Chain E: V.135
- Ligands: CWJ.1
2 PLIP interactions:2 interactions with chain A- Water bridges: A:M.74, A:M.74
DMS.9: 7 residues within 4Å:- Chain A: M.1, K.3
- Chain B: T.26, Q.27, M.28, F.29, D.30
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:D.30
- Hydrogen bonds: A:M.1
DMS.13: 5 residues within 4Å:- Chain A: V.135
- Chain C: L.73, L.102, N.106
- Ligands: CWJ.10
2 PLIP interactions:2 interactions with chain C- Water bridges: C:M.74, C:M.74
DMS.18: 7 residues within 4Å:- Chain C: M.1, K.3
- Chain D: T.26, Q.27, M.28, F.29, D.30
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain C- Salt bridges: D:D.30
- Hydrogen bonds: C:M.1
DMS.22: 5 residues within 4Å:- Chain C: V.135
- Chain E: L.73, L.102, N.106
- Ligands: CWJ.19
2 PLIP interactions:2 interactions with chain E- Water bridges: E:M.74, E:M.74
DMS.27: 7 residues within 4Å:- Chain E: M.1, K.3
- Chain F: T.26, Q.27, M.28, F.29, D.30
2 PLIP interactions:1 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:M.1
- Salt bridges: F:D.30
- 3 x POP: PYROPHOSPHATE 2-(Non-covalent)
POP.8: 8 residues within 4Å:- Chain B: G.9, T.10, F.11, H.18, R.88, R.91, S.128, S.129
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:T.10, B:F.11, B:R.88, B:S.129, B:S.129
- Water bridges: B:D.12, B:S.129, B:S.130
- Salt bridges: B:H.18, B:H.18, B:R.91
POP.17: 8 residues within 4Å:- Chain D: G.9, T.10, F.11, H.18, R.88, R.91, S.128, S.129
12 PLIP interactions:12 interactions with chain D- Hydrogen bonds: D:T.10, D:F.11, D:R.88, D:S.129, D:S.129
- Water bridges: D:T.10, D:D.12, D:S.129, D:S.130
- Salt bridges: D:H.18, D:H.18, D:R.91
POP.26: 8 residues within 4Å:- Chain F: G.9, T.10, F.11, H.18, R.88, R.91, S.128, S.129
11 PLIP interactions:11 interactions with chain F- Hydrogen bonds: F:T.10, F:F.11, F:R.88, F:S.129, F:S.129
- Water bridges: F:D.12, F:S.129, F:S.130
- Salt bridges: F:H.18, F:H.18, F:R.91
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Proudfoot, A. et al., High-Confidence Protein-Ligand Complex Modeling by NMR-Guided Docking Enables Early Hit Optimization. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-12-27
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CWJ: 5-methoxy-2-methyl-1H-indole(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 3 x POP: PYROPHOSPHATE 2-(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Proudfoot, A. et al., High-Confidence Protein-Ligand Complex Modeling by NMR-Guided Docking Enables Early Hit Optimization. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-12-27
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B