- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x CWM: 2-methyl-1H-benzimidazol-7-ol(Non-covalent)
- 9 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 5 residues within 4Å:- Chain A: S.39, P.40, S.41
- Chain C: R.137, H.138
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain C- Hydrogen bonds: A:S.41, C:E.134
- Water bridges: A:S.39, C:H.138
- Salt bridges: C:R.137, C:H.138
SO4.3: 5 residues within 4Å:- Chain A: T.26, Q.27, M.28, F.29, D.30
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.27, A:D.30, A:D.30
SO4.4: 2 residues within 4Å:- Chain A: S.121, K.122
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.24, A:S.121, A:K.122
- Water bridges: A:K.122, A:K.122
- Salt bridges: A:K.122
SO4.8: 5 residues within 4Å:- Chain A: R.137, H.138
- Chain B: S.39, P.40, S.41
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Water bridges: A:H.138, B:S.39
- Salt bridges: A:R.137, A:H.138
- Hydrogen bonds: B:S.41
SO4.9: 5 residues within 4Å:- Chain B: T.26, Q.27, M.28, F.29, D.30
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.27, B:D.30
SO4.10: 2 residues within 4Å:- Chain B: S.121, K.122
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.24, B:S.121, B:K.122
- Water bridges: B:K.122, B:K.122
- Salt bridges: B:K.122
SO4.14: 5 residues within 4Å:- Chain B: R.137, H.138
- Chain C: S.39, P.40, S.41
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain C- Water bridges: B:H.138, C:S.39
- Salt bridges: B:R.137, B:H.138
- Hydrogen bonds: C:S.41
SO4.15: 5 residues within 4Å:- Chain C: T.26, Q.27, M.28, F.29, D.30
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Q.27, C:D.30, C:D.30
SO4.16: 2 residues within 4Å:- Chain C: S.121, K.122
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.24, C:S.121, C:K.122
- Water bridges: C:K.122, C:K.122
- Salt bridges: C:K.122
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.5: 6 residues within 4Å:- Chain A: Y.7, P.8, G.9, R.88, G.89
- Ligands: POP.6
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.7, A:P.8, A:G.89
- Water bridges: A:I.127
PEG.11: 6 residues within 4Å:- Chain B: Y.7, P.8, G.9, R.88, G.89
- Ligands: POP.12
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:P.8, B:G.89
- Water bridges: B:I.127
PEG.17: 6 residues within 4Å:- Chain C: Y.7, P.8, G.9, R.88, G.89
- Ligands: POP.18
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:P.8, C:G.89
- Water bridges: C:I.127
- 3 x POP: PYROPHOSPHATE 2-(Non-covalent)
POP.6: 8 residues within 4Å:- Chain A: G.9, T.10, F.11, H.18, R.91, S.128, S.129
- Ligands: PEG.5
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:T.10, A:F.11, A:S.129
- Water bridges: A:D.12, A:K.42, A:S.129, A:S.130
- Salt bridges: A:H.18, A:H.18, A:R.91
POP.12: 8 residues within 4Å:- Chain B: G.9, T.10, F.11, H.18, R.91, S.128, S.129
- Ligands: PEG.11
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:T.10, B:F.11, B:S.129
- Water bridges: B:D.12, B:K.42, B:S.129, B:S.130
- Salt bridges: B:H.18, B:H.18, B:R.91
POP.18: 8 residues within 4Å:- Chain C: G.9, T.10, F.11, H.18, R.91, S.128, S.129
- Ligands: PEG.17
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:T.10, C:F.11, C:S.129
- Water bridges: C:T.10, C:D.12, C:K.42, C:S.129, C:S.130
- Salt bridges: C:H.18, C:H.18, C:R.91
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Proudfoot, A. et al., High-Confidence Protein-Ligand Complex Modeling by NMR-Guided Docking Enables Early Hit Optimization. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-12-27
- Peptides
- Phosphopantetheine adenylyltransferase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x CWM: 2-methyl-1H-benzimidazol-7-ol(Non-covalent)
- 9 x SO4: SULFATE ION(Non-functional Binders)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 3 x POP: PYROPHOSPHATE 2-(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Proudfoot, A. et al., High-Confidence Protein-Ligand Complex Modeling by NMR-Guided Docking Enables Early Hit Optimization. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-12-27
- Peptides
- Phosphopantetheine adenylyltransferase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B