- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x CWA: (4R)-4-[5-(difluoromethyl)-1H-imidazol-1-yl]-3,3-dimethyl-3,4-dihydro-1H-2-benzopyran-1-one(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 2 residues within 4Å:- Chain A: S.121, K.122
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:S.121, A:K.122
- Water bridges: A:K.122, A:E.123, A:E.123
- Salt bridges: A:K.122
SO4.3: 7 residues within 4Å:- Chain A: S.39, P.40, S.41
- Chain C: E.134, R.137, H.138
- Ligands: CWA.1
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain A- Hydrogen bonds: C:R.137, A:S.41, A:S.41
- Salt bridges: C:H.138
- Water bridges: A:S.39
SO4.4: 4 residues within 4Å:- Chain A: H.18, R.91, S.128, S.129
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:S.129
- Water bridges: A:H.18, A:R.91, A:S.129, A:S.130, A:S.130
- Salt bridges: A:H.18, A:R.91
SO4.5: 5 residues within 4Å:- Chain A: G.9, T.10, K.42, R.88
- Ligands: CWA.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.10
- Water bridges: A:F.11
- Salt bridges: A:R.88
SO4.8: 2 residues within 4Å:- Chain B: S.121, K.122
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.121, B:K.122
- Water bridges: B:K.122, B:E.123, B:E.123
- Salt bridges: B:K.122
SO4.9: 7 residues within 4Å:- Chain A: E.134, R.137, H.138
- Chain B: S.39, P.40, S.41
- Ligands: CWA.7
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:S.41, B:S.41, A:R.137
- Water bridges: B:S.39
- Salt bridges: A:H.138
SO4.10: 4 residues within 4Å:- Chain B: H.18, R.91, S.128, S.129
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:S.129
- Water bridges: B:H.18, B:R.91, B:S.129, B:S.130, B:S.130
- Salt bridges: B:H.18, B:R.91
SO4.11: 5 residues within 4Å:- Chain B: G.9, T.10, K.42, R.88
- Ligands: CWA.7
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.10
- Water bridges: B:F.11
- Salt bridges: B:R.88
SO4.14: 2 residues within 4Å:- Chain C: S.121, K.122
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:S.121, C:K.122
- Water bridges: C:K.122, C:E.123, C:E.123
- Salt bridges: C:K.122
SO4.15: 7 residues within 4Å:- Chain B: E.134, R.137, H.138
- Chain C: S.39, P.40, S.41
- Ligands: CWA.13
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:S.41, C:S.41, B:R.137
- Water bridges: C:S.39
- Salt bridges: B:H.138
SO4.16: 4 residues within 4Å:- Chain C: H.18, R.91, S.128, S.129
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:S.129
- Water bridges: C:H.18, C:R.91, C:S.129, C:S.130, C:S.130
- Salt bridges: C:H.18, C:R.91
SO4.17: 5 residues within 4Å:- Chain C: G.9, T.10, K.42, R.88
- Ligands: CWA.13
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:T.10, C:T.10
- Water bridges: C:F.11
- Salt bridges: C:R.88
- 3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.6: 5 residues within 4Å:- Chain A: T.26, Q.27, M.28, F.29, D.30
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:D.30
DMS.12: 5 residues within 4Å:- Chain B: T.26, Q.27, M.28, F.29, D.30
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:D.30
DMS.18: 5 residues within 4Å:- Chain C: T.26, Q.27, M.28, F.29, D.30
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:D.30
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Proudfoot, A. et al., High-Confidence Protein-Ligand Complex Modeling by NMR-Guided Docking Enables Early Hit Optimization. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-12-27
- Peptides
- Phosphopantetheine adenylyltransferase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x CWA: (4R)-4-[5-(difluoromethyl)-1H-imidazol-1-yl]-3,3-dimethyl-3,4-dihydro-1H-2-benzopyran-1-one(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Proudfoot, A. et al., High-Confidence Protein-Ligand Complex Modeling by NMR-Guided Docking Enables Early Hit Optimization. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-12-27
- Peptides
- Phosphopantetheine adenylyltransferase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B