- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- homo-24-mer
- Ligands
- 24 x CWJ: 5-methoxy-2-methyl-1H-indole(Non-covalent)
- 48 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 3 residues within 4Å:- Chain A: P.120, S.121, K.122
Ligand excluded by PLIPSO4.3: 4 residues within 4Å:- Chain A: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.6: 3 residues within 4Å:- Chain B: P.120, S.121, K.122
Ligand excluded by PLIPSO4.7: 4 residues within 4Å:- Chain B: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.10: 3 residues within 4Å:- Chain C: P.120, S.121, K.122
Ligand excluded by PLIPSO4.11: 4 residues within 4Å:- Chain C: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.14: 3 residues within 4Å:- Chain D: P.120, S.121, K.122
Ligand excluded by PLIPSO4.15: 4 residues within 4Å:- Chain D: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.18: 3 residues within 4Å:- Chain E: P.120, S.121, K.122
Ligand excluded by PLIPSO4.19: 4 residues within 4Å:- Chain E: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.22: 3 residues within 4Å:- Chain F: P.120, S.121, K.122
Ligand excluded by PLIPSO4.23: 4 residues within 4Å:- Chain F: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.26: 3 residues within 4Å:- Chain G: P.120, S.121, K.122
Ligand excluded by PLIPSO4.27: 4 residues within 4Å:- Chain G: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.30: 3 residues within 4Å:- Chain H: P.120, S.121, K.122
Ligand excluded by PLIPSO4.31: 4 residues within 4Å:- Chain H: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.34: 3 residues within 4Å:- Chain I: P.120, S.121, K.122
Ligand excluded by PLIPSO4.35: 4 residues within 4Å:- Chain I: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.38: 3 residues within 4Å:- Chain J: P.120, S.121, K.122
Ligand excluded by PLIPSO4.39: 4 residues within 4Å:- Chain J: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.42: 3 residues within 4Å:- Chain K: P.120, S.121, K.122
Ligand excluded by PLIPSO4.43: 4 residues within 4Å:- Chain K: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.46: 3 residues within 4Å:- Chain L: P.120, S.121, K.122
Ligand excluded by PLIPSO4.47: 4 residues within 4Å:- Chain L: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.50: 3 residues within 4Å:- Chain M: R.24, S.121, K.122
Ligand excluded by PLIPSO4.51: 5 residues within 4Å:- Chain M: S.39, P.40, S.41
- Chain S: R.137, H.138
Ligand excluded by PLIPSO4.55: 3 residues within 4Å:- Chain N: R.24, S.121, K.122
Ligand excluded by PLIPSO4.56: 5 residues within 4Å:- Chain N: S.39, P.40, S.41
- Chain Q: R.137, H.138
Ligand excluded by PLIPSO4.60: 3 residues within 4Å:- Chain O: R.24, S.121, K.122
Ligand excluded by PLIPSO4.61: 5 residues within 4Å:- Chain O: S.39, P.40, S.41
- Chain R: R.137, H.138
Ligand excluded by PLIPSO4.65: 3 residues within 4Å:- Chain P: R.24, S.121, K.122
Ligand excluded by PLIPSO4.66: 5 residues within 4Å:- Chain P: S.39, P.40, S.41
- Chain T: R.137, H.138
Ligand excluded by PLIPSO4.70: 3 residues within 4Å:- Chain Q: R.24, S.121, K.122
Ligand excluded by PLIPSO4.71: 5 residues within 4Å:- Chain Q: S.39, P.40, S.41
- Chain W: R.137, H.138
Ligand excluded by PLIPSO4.75: 3 residues within 4Å:- Chain R: R.24, S.121, K.122
Ligand excluded by PLIPSO4.76: 5 residues within 4Å:- Chain R: S.39, P.40, S.41
- Chain U: R.137, H.138
Ligand excluded by PLIPSO4.80: 3 residues within 4Å:- Chain S: R.24, S.121, K.122
Ligand excluded by PLIPSO4.81: 5 residues within 4Å:- Chain S: S.39, P.40, S.41
- Chain V: R.137, H.138
Ligand excluded by PLIPSO4.85: 3 residues within 4Å:- Chain T: R.24, S.121, K.122
Ligand excluded by PLIPSO4.86: 5 residues within 4Å:- Chain T: S.39, P.40, S.41
- Chain X: R.137, H.138
Ligand excluded by PLIPSO4.90: 3 residues within 4Å:- Chain U: R.24, S.121, K.122
Ligand excluded by PLIPSO4.91: 5 residues within 4Å:- Chain O: R.137, H.138
- Chain U: S.39, P.40, S.41
Ligand excluded by PLIPSO4.95: 3 residues within 4Å:- Chain V: R.24, S.121, K.122
Ligand excluded by PLIPSO4.96: 5 residues within 4Å:- Chain M: R.137, H.138
- Chain V: S.39, P.40, S.41
Ligand excluded by PLIPSO4.100: 3 residues within 4Å:- Chain W: R.24, S.121, K.122
Ligand excluded by PLIPSO4.101: 5 residues within 4Å:- Chain N: R.137, H.138
- Chain W: S.39, P.40, S.41
Ligand excluded by PLIPSO4.105: 3 residues within 4Å:- Chain X: R.24, S.121, K.122
Ligand excluded by PLIPSO4.106: 5 residues within 4Å:- Chain P: R.137, H.138
- Chain X: S.39, P.40, S.41
Ligand excluded by PLIP- 24 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.4: 5 residues within 4Å:- Chain A: L.73, L.102, N.106
- Chain J: V.135
- Ligands: CWJ.1
Ligand excluded by PLIPDMS.8: 5 residues within 4Å:- Chain B: L.73, L.102, N.106
- Chain K: V.135
- Ligands: CWJ.5
Ligand excluded by PLIPDMS.12: 5 residues within 4Å:- Chain C: L.73, L.102, N.106
- Chain I: V.135
- Ligands: CWJ.9
Ligand excluded by PLIPDMS.16: 5 residues within 4Å:- Chain D: L.73, L.102, N.106
- Chain L: V.135
- Ligands: CWJ.13
Ligand excluded by PLIPDMS.20: 5 residues within 4Å:- Chain B: V.135
- Chain E: L.73, L.102, N.106
- Ligands: CWJ.17
Ligand excluded by PLIPDMS.24: 5 residues within 4Å:- Chain C: V.135
- Chain F: L.73, L.102, N.106
- Ligands: CWJ.21
Ligand excluded by PLIPDMS.28: 5 residues within 4Å:- Chain A: V.135
- Chain G: L.73, L.102, N.106
- Ligands: CWJ.25
Ligand excluded by PLIPDMS.32: 5 residues within 4Å:- Chain D: V.135
- Chain H: L.73, L.102, N.106
- Ligands: CWJ.29
Ligand excluded by PLIPDMS.36: 5 residues within 4Å:- Chain F: V.135
- Chain I: L.73, L.102, N.106
- Ligands: CWJ.33
Ligand excluded by PLIPDMS.40: 5 residues within 4Å:- Chain G: V.135
- Chain J: L.73, L.102, N.106
- Ligands: CWJ.37
Ligand excluded by PLIPDMS.44: 5 residues within 4Å:- Chain E: V.135
- Chain K: L.73, L.102, N.106
- Ligands: CWJ.41
Ligand excluded by PLIPDMS.48: 5 residues within 4Å:- Chain H: V.135
- Chain L: L.73, L.102, N.106
- Ligands: CWJ.45
Ligand excluded by PLIPDMS.53: 5 residues within 4Å:- Chain M: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPDMS.58: 5 residues within 4Å:- Chain N: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPDMS.63: 5 residues within 4Å:- Chain O: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPDMS.68: 5 residues within 4Å:- Chain P: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPDMS.73: 5 residues within 4Å:- Chain Q: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPDMS.78: 5 residues within 4Å:- Chain R: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPDMS.83: 5 residues within 4Å:- Chain S: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPDMS.88: 5 residues within 4Å:- Chain T: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPDMS.93: 5 residues within 4Å:- Chain U: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPDMS.98: 5 residues within 4Å:- Chain V: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPDMS.103: 5 residues within 4Å:- Chain W: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIPDMS.108: 5 residues within 4Å:- Chain X: T.26, Q.27, M.28, F.29, D.30
Ligand excluded by PLIP- 12 x POP: PYROPHOSPHATE 2-(Non-covalent)
POP.52: 8 residues within 4Å:- Chain M: G.9, T.10, F.11, H.18, R.88, R.91, S.128, S.129
11 PLIP interactions:11 interactions with chain M- Hydrogen bonds: M:T.10, M:F.11, M:R.88, M:S.129, M:S.129
- Water bridges: M:D.12, M:S.129, M:S.130
- Salt bridges: M:H.18, M:H.18, M:R.91
POP.57: 8 residues within 4Å:- Chain N: G.9, T.10, F.11, H.18, R.88, R.91, S.128, S.129
11 PLIP interactions:11 interactions with chain N- Hydrogen bonds: N:T.10, N:F.11, N:R.88, N:S.129, N:S.129
- Water bridges: N:D.12, N:S.129, N:S.130
- Salt bridges: N:H.18, N:H.18, N:R.91
POP.62: 8 residues within 4Å:- Chain O: G.9, T.10, F.11, H.18, R.88, R.91, S.128, S.129
12 PLIP interactions:12 interactions with chain O- Hydrogen bonds: O:T.10, O:F.11, O:R.88, O:S.129, O:S.129
- Water bridges: O:T.10, O:D.12, O:S.129, O:S.130
- Salt bridges: O:H.18, O:H.18, O:R.91
POP.67: 8 residues within 4Å:- Chain P: G.9, T.10, F.11, H.18, R.88, R.91, S.128, S.129
12 PLIP interactions:12 interactions with chain P- Hydrogen bonds: P:T.10, P:F.11, P:R.88, P:S.129, P:S.129
- Water bridges: P:T.10, P:D.12, P:S.129, P:S.130
- Salt bridges: P:H.18, P:H.18, P:R.91
POP.72: 8 residues within 4Å:- Chain Q: G.9, T.10, F.11, H.18, R.88, R.91, S.128, S.129
12 PLIP interactions:12 interactions with chain Q- Hydrogen bonds: Q:T.10, Q:F.11, Q:R.88, Q:S.129, Q:S.129
- Water bridges: Q:T.10, Q:D.12, Q:S.129, Q:S.130
- Salt bridges: Q:H.18, Q:H.18, Q:R.91
POP.77: 8 residues within 4Å:- Chain R: G.9, T.10, F.11, H.18, R.88, R.91, S.128, S.129
11 PLIP interactions:11 interactions with chain R- Hydrogen bonds: R:T.10, R:F.11, R:R.88, R:S.129, R:S.129
- Water bridges: R:D.12, R:S.129, R:S.130
- Salt bridges: R:H.18, R:H.18, R:R.91
POP.82: 8 residues within 4Å:- Chain S: G.9, T.10, F.11, H.18, R.88, R.91, S.128, S.129
12 PLIP interactions:12 interactions with chain S- Hydrogen bonds: S:T.10, S:F.11, S:R.88, S:S.129, S:S.129
- Water bridges: S:T.10, S:D.12, S:S.129, S:S.130
- Salt bridges: S:H.18, S:H.18, S:R.91
POP.87: 8 residues within 4Å:- Chain T: G.9, T.10, F.11, H.18, R.88, R.91, S.128, S.129
11 PLIP interactions:11 interactions with chain T- Hydrogen bonds: T:T.10, T:F.11, T:R.88, T:S.129, T:S.129
- Water bridges: T:D.12, T:S.129, T:S.130
- Salt bridges: T:H.18, T:H.18, T:R.91
POP.92: 8 residues within 4Å:- Chain U: G.9, T.10, F.11, H.18, R.88, R.91, S.128, S.129
12 PLIP interactions:12 interactions with chain U- Hydrogen bonds: U:T.10, U:F.11, U:R.88, U:S.129, U:S.129
- Water bridges: U:T.10, U:D.12, U:S.129, U:S.130
- Salt bridges: U:H.18, U:H.18, U:R.91
POP.97: 8 residues within 4Å:- Chain V: G.9, T.10, F.11, H.18, R.88, R.91, S.128, S.129
11 PLIP interactions:11 interactions with chain V- Hydrogen bonds: V:T.10, V:F.11, V:R.88, V:S.129, V:S.129
- Water bridges: V:D.12, V:S.129, V:S.130
- Salt bridges: V:H.18, V:H.18, V:R.91
POP.102: 8 residues within 4Å:- Chain W: G.9, T.10, F.11, H.18, R.88, R.91, S.128, S.129
11 PLIP interactions:11 interactions with chain W- Hydrogen bonds: W:T.10, W:F.11, W:R.88, W:S.129, W:S.129
- Water bridges: W:D.12, W:S.129, W:S.130
- Salt bridges: W:H.18, W:H.18, W:R.91
POP.107: 8 residues within 4Å:- Chain X: G.9, T.10, F.11, H.18, R.88, R.91, S.128, S.129
12 PLIP interactions:12 interactions with chain X- Hydrogen bonds: X:T.10, X:F.11, X:R.88, X:S.129, X:S.129
- Water bridges: X:T.10, X:D.12, X:S.129, X:S.130
- Salt bridges: X:H.18, X:H.18, X:R.91
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Proudfoot, A. et al., High-Confidence Protein-Ligand Complex Modeling by NMR-Guided Docking Enables Early Hit Optimization. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-12-27
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
BN
BO
BP
BQ
BR
BS
BT
BU
BV
BW
BX
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- homo-24-mer
- Ligands
- 24 x CWJ: 5-methoxy-2-methyl-1H-indole(Non-covalent)
- 48 x SO4: SULFATE ION(Non-functional Binders)
- 24 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 12 x POP: PYROPHOSPHATE 2-(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Proudfoot, A. et al., High-Confidence Protein-Ligand Complex Modeling by NMR-Guided Docking Enables Early Hit Optimization. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-12-27
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
BN
BO
BP
BQ
BR
BS
BT
BU
BV
BW
BX
B