- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-24-mer
- Ligands
- 84 x SO4: SULFATE ION(Non-functional Binders)
- 24 x K: POTASSIUM ION(Non-covalent)
K.6: 5 residues within 4Å:- Chain A: T.10, F.11, H.18
- Ligands: SO4.2, SO4.4
Ligand excluded by PLIPK.7: 1 residues within 4Å:- Chain A: I.21
Ligand excluded by PLIPK.13: 5 residues within 4Å:- Chain B: T.10, F.11, H.18
- Ligands: SO4.9, SO4.11
Ligand excluded by PLIPK.14: 1 residues within 4Å:- Chain B: I.21
Ligand excluded by PLIPK.20: 5 residues within 4Å:- Chain C: T.10, F.11, H.18
- Ligands: SO4.16, SO4.18
Ligand excluded by PLIPK.21: 1 residues within 4Å:- Chain C: I.21
Ligand excluded by PLIPK.27: 5 residues within 4Å:- Chain D: T.10, F.11, H.18
- Ligands: SO4.23, SO4.25
Ligand excluded by PLIPK.28: 1 residues within 4Å:- Chain D: I.21
Ligand excluded by PLIPK.34: 5 residues within 4Å:- Chain E: T.10, F.11, H.18
- Ligands: SO4.30, SO4.32
Ligand excluded by PLIPK.35: 1 residues within 4Å:- Chain E: I.21
Ligand excluded by PLIPK.41: 5 residues within 4Å:- Chain F: T.10, F.11, H.18
- Ligands: SO4.37, SO4.39
Ligand excluded by PLIPK.42: 1 residues within 4Å:- Chain F: I.21
Ligand excluded by PLIPK.48: 5 residues within 4Å:- Chain G: T.10, F.11, H.18
- Ligands: SO4.44, SO4.46
Ligand excluded by PLIPK.49: 1 residues within 4Å:- Chain G: I.21
Ligand excluded by PLIPK.55: 5 residues within 4Å:- Chain H: T.10, F.11, H.18
- Ligands: SO4.51, SO4.53
Ligand excluded by PLIPK.56: 1 residues within 4Å:- Chain H: I.21
Ligand excluded by PLIPK.62: 5 residues within 4Å:- Chain I: T.10, F.11, H.18
- Ligands: SO4.58, SO4.60
Ligand excluded by PLIPK.63: 1 residues within 4Å:- Chain I: I.21
Ligand excluded by PLIPK.69: 5 residues within 4Å:- Chain J: T.10, F.11, H.18
- Ligands: SO4.65, SO4.67
Ligand excluded by PLIPK.70: 1 residues within 4Å:- Chain J: I.21
Ligand excluded by PLIPK.76: 5 residues within 4Å:- Chain K: T.10, F.11, H.18
- Ligands: SO4.72, SO4.74
Ligand excluded by PLIPK.77: 1 residues within 4Å:- Chain K: I.21
Ligand excluded by PLIPK.83: 5 residues within 4Å:- Chain L: T.10, F.11, H.18
- Ligands: SO4.79, SO4.81
Ligand excluded by PLIPK.84: 1 residues within 4Å:- Chain L: I.21
Ligand excluded by PLIP- 12 x CWG: 3-(4-chlorophenyl)-6-methoxy-4,5-dimethylpyridazine(Non-covalent)
CWG.85: 13 residues within 4Å:- Chain M: A.37, A.38, S.39, F.70, S.71, D.72, L.73, M.74, L.102, M.105
- Chain Q: L.131, V.135, H.138
5 PLIP interactions:4 interactions with chain M, 1 interactions with chain Q- Hydrophobic interactions: M:L.73, M:M.74, Q:H.138
- Hydrogen bonds: M:A.38, M:S.39
CWG.89: 13 residues within 4Å:- Chain N: A.37, A.38, S.39, F.70, S.71, D.72, L.73, M.74, L.102, M.105
- Chain S: L.131, V.135, H.138
5 PLIP interactions:4 interactions with chain N, 1 interactions with chain S- Hydrophobic interactions: N:L.73, N:M.74, S:H.138
- Hydrogen bonds: N:A.38, N:S.39
CWG.93: 13 residues within 4Å:- Chain O: A.37, A.38, S.39, F.70, S.71, D.72, L.73, M.74, L.102, M.105
- Chain T: L.131, V.135, H.138
5 PLIP interactions:4 interactions with chain O, 1 interactions with chain T- Hydrophobic interactions: O:L.73, O:M.74, T:H.138
- Hydrogen bonds: O:A.38, O:S.39
CWG.97: 13 residues within 4Å:- Chain P: A.37, A.38, S.39, F.70, S.71, D.72, L.73, M.74, L.102, M.105
- Chain R: L.131, V.135, H.138
5 PLIP interactions:4 interactions with chain P, 1 interactions with chain R- Hydrophobic interactions: P:L.73, P:M.74, R:H.138
- Hydrogen bonds: P:A.38, P:S.39
CWG.101: 13 residues within 4Å:- Chain Q: A.37, A.38, S.39, F.70, S.71, D.72, L.73, M.74, L.102, M.105
- Chain U: L.131, V.135, H.138
5 PLIP interactions:1 interactions with chain U, 4 interactions with chain Q- Hydrophobic interactions: U:H.138, Q:L.73, Q:M.74
- Hydrogen bonds: Q:A.38, Q:S.39
CWG.105: 13 residues within 4Å:- Chain R: A.37, A.38, S.39, F.70, S.71, D.72, L.73, M.74, L.102, M.105
- Chain W: L.131, V.135, H.138
5 PLIP interactions:4 interactions with chain R, 1 interactions with chain W- Hydrophobic interactions: R:L.73, R:M.74, W:H.138
- Hydrogen bonds: R:A.38, R:S.39
CWG.109: 13 residues within 4Å:- Chain S: A.37, A.38, S.39, F.70, S.71, D.72, L.73, M.74, L.102, M.105
- Chain X: L.131, V.135, H.138
5 PLIP interactions:4 interactions with chain S, 1 interactions with chain X- Hydrophobic interactions: S:L.73, S:M.74, X:H.138
- Hydrogen bonds: S:A.38, S:S.39
CWG.113: 13 residues within 4Å:- Chain T: A.37, A.38, S.39, F.70, S.71, D.72, L.73, M.74, L.102, M.105
- Chain V: L.131, V.135, H.138
5 PLIP interactions:1 interactions with chain V, 4 interactions with chain T- Hydrophobic interactions: V:H.138, T:L.73, T:M.74
- Hydrogen bonds: T:A.38, T:S.39
CWG.117: 13 residues within 4Å:- Chain M: L.131, V.135, H.138
- Chain U: A.37, A.38, S.39, F.70, S.71, D.72, L.73, M.74, L.102, M.105
5 PLIP interactions:4 interactions with chain U, 1 interactions with chain M- Hydrophobic interactions: U:L.73, U:M.74, M:H.138
- Hydrogen bonds: U:A.38, U:S.39
CWG.121: 13 residues within 4Å:- Chain O: L.131, V.135, H.138
- Chain V: A.37, A.38, S.39, F.70, S.71, D.72, L.73, M.74, L.102, M.105
5 PLIP interactions:1 interactions with chain O, 4 interactions with chain V- Hydrophobic interactions: O:H.138, V:L.73, V:M.74
- Hydrogen bonds: V:A.38, V:S.39
CWG.125: 13 residues within 4Å:- Chain P: L.131, V.135, H.138
- Chain W: A.37, A.38, S.39, F.70, S.71, D.72, L.73, M.74, L.102, M.105
5 PLIP interactions:4 interactions with chain W, 1 interactions with chain P- Hydrophobic interactions: W:L.73, W:M.74, P:H.138
- Hydrogen bonds: W:A.38, W:S.39
CWG.129: 13 residues within 4Å:- Chain N: L.131, V.135, H.138
- Chain X: A.37, A.38, S.39, F.70, S.71, D.72, L.73, M.74, L.102, M.105
5 PLIP interactions:4 interactions with chain X, 1 interactions with chain N- Hydrophobic interactions: X:L.73, X:M.74, N:H.138
- Hydrogen bonds: X:A.38, X:S.39
- 12 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.88: 5 residues within 4Å:- Chain M: T.26, Q.27, M.28, F.29, D.30
1 PLIP interactions:1 interactions with chain M- Salt bridges: M:D.30
DMS.92: 5 residues within 4Å:- Chain N: T.26, Q.27, M.28, F.29, D.30
1 PLIP interactions:1 interactions with chain N- Salt bridges: N:D.30
DMS.96: 5 residues within 4Å:- Chain O: T.26, Q.27, M.28, F.29, D.30
1 PLIP interactions:1 interactions with chain O- Salt bridges: O:D.30
DMS.100: 5 residues within 4Å:- Chain P: T.26, Q.27, M.28, F.29, D.30
1 PLIP interactions:1 interactions with chain P- Salt bridges: P:D.30
DMS.104: 5 residues within 4Å:- Chain Q: T.26, Q.27, M.28, F.29, D.30
1 PLIP interactions:1 interactions with chain Q- Salt bridges: Q:D.30
DMS.108: 5 residues within 4Å:- Chain R: T.26, Q.27, M.28, F.29, D.30
1 PLIP interactions:1 interactions with chain R- Salt bridges: R:D.30
DMS.112: 5 residues within 4Å:- Chain S: T.26, Q.27, M.28, F.29, D.30
1 PLIP interactions:1 interactions with chain S- Salt bridges: S:D.30
DMS.116: 5 residues within 4Å:- Chain T: T.26, Q.27, M.28, F.29, D.30
1 PLIP interactions:1 interactions with chain T- Salt bridges: T:D.30
DMS.120: 5 residues within 4Å:- Chain U: T.26, Q.27, M.28, F.29, D.30
1 PLIP interactions:1 interactions with chain U- Salt bridges: U:D.30
DMS.124: 5 residues within 4Å:- Chain V: T.26, Q.27, M.28, F.29, D.30
1 PLIP interactions:1 interactions with chain V- Salt bridges: V:D.30
DMS.128: 5 residues within 4Å:- Chain W: T.26, Q.27, M.28, F.29, D.30
1 PLIP interactions:1 interactions with chain W- Salt bridges: W:D.30
DMS.132: 5 residues within 4Å:- Chain X: T.26, Q.27, M.28, F.29, D.30
1 PLIP interactions:1 interactions with chain X- Salt bridges: X:D.30
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Proudfoot, A. et al., High-Confidence Protein-Ligand Complex Modeling by NMR-Guided Docking Enables Early Hit Optimization. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-12-27
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
BE
BF
BG
BH
BI
BJ
BK
BL
BM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-24-mer
- Ligands
- 84 x SO4: SULFATE ION(Non-functional Binders)
- 24 x K: POTASSIUM ION(Non-covalent)
- 12 x CWG: 3-(4-chlorophenyl)-6-methoxy-4,5-dimethylpyridazine(Non-covalent)
- 12 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Proudfoot, A. et al., High-Confidence Protein-Ligand Complex Modeling by NMR-Guided Docking Enables Early Hit Optimization. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-12-27
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
BE
BF
BG
BH
BI
BJ
BK
BL
BM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A