SMTL ID : 6cdc.1

GID4 in complex with a tetrapeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x PRO- GLY- LEU- TRP: Tetrapeptide PGLW(Non-covalent)

PRO-GLY-LEU-TRP.1: 19 residues within 4Å: Chain A: Q.10, S.12, K.13, Y.17, I.39, L.42, E.115, G.129, A.130, S.131, Y.136, Y.151, H.153, S.155, S.156, E.157, Q.160 Ligands: UNX.5, UNX.8 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.39, A:L.42, A:L.42 Hydrogen bonds: A:Q.10, A:G.129, A:S.131, A:S.131, A:Y.136, A:E.157, A:Q.160, A:Q.160 pi-Stacking: A:H.153

7 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 3 residues within 4Å: Chain A: G.29, S.31, K.61 No protein-ligand interaction detected (PLIP) UNX.3: 1 residues within 4Å: Chain A: S.156 No protein-ligand interaction detected (PLIP) UNX.4: 4 residues within 4Å: Chain A: D.126, I.127, A.130, S.131 No protein-ligand interaction detected (PLIP) UNX.5: 6 residues within 4Å: Chain A: S.131, Y.151, H.153, S.156 Ligands: PRO-GLY-LEU-TRP.1, PRO-GLY-LEU-TRP.1 No protein-ligand interaction detected (PLIP) UNX.6: 8 residues within 4Å: Chain A: I.39, K.40, G.41, L.42, Y.46, P.47, T.48, L.49 No protein-ligand interaction detected (PLIP) UNX.7: 2 residues within 4Å: Chain A: K.68, W.69 No protein-ligand interaction detected (PLIP) UNX.8: 1 residues within 4Å: Ligands: PRO-GLY-LEU-TRP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., Molecular basis of GID4-mediated recognition of degrons for the Pro/N-end rule pathway. Nat. Chem. Biol. (2018)

Release Date

2018-03-07

Peptides

Glucose-induced degradation protein 4 homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucose-induced degradation protein 4 homolog

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