- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 1 x VAL: VALINE(Non-covalent)
VAL.1: 13 residues within 4Å:- Chain A: N.112, A.113, F.130, L.133, V.139, H.142, E.143, I.188, L.202, R.203, H.231
- Ligands: LYS.2, ZN.3
7 PLIP interactions:4 interactions with chain A, 3 Ligand-Ligand interactions- Hydrophobic interactions: A:L.202, K.2
- Hydrogen bonds: A:N.112, A:R.203, A:R.203, K.2
- Water bridges: V.1
- 1 x LYS: LYSINE(Non-covalent)
LYS.2: 7 residues within 4Å:- Chain A: N.111, N.112, F.130, L.202, R.203, H.231
- Ligands: VAL.1
12 PLIP interactions:6 interactions with chain A, 6 Ligand-Ligand interactions- Hydrophobic interactions: A:F.130, A:L.202, V.1
- Hydrogen bonds: A:N.111, A:N.112, A:N.112, K.2
- Salt bridges: A:H.231, K.2
- Water bridges: V.1, V.1, V.1
- 1 x ZN: ZINC ION(Non-covalent)
ZN.3: 5 residues within 4Å:- Chain A: H.142, H.146, Y.157, E.166
- Ligands: VAL.1
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.142, A:H.146, A:E.166, H2O.2, H2O.2
- 4 x CA: CALCIUM ION(Non-covalent)
CA.4: 8 residues within 4Å:- Chain A: D.138, E.177, D.185, E.187, I.188, G.189, E.190
- Ligands: CA.7
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.138, A:E.177, A:E.177, A:D.185, A:E.190
CA.5: 3 residues within 4Å:- Chain A: D.57, D.59, Q.61
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.57, A:D.59, A:Q.61, H2O.4, H2O.9
CA.6: 4 residues within 4Å:- Chain A: Y.193, T.194, I.197, D.200
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:Y.193, A:I.197, A:D.200, H2O.2, H2O.9
CA.7: 6 residues within 4Å:- Chain A: E.177, N.183, P.184, D.185, E.190
- Ligands: CA.4
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.177, A:N.183, A:D.185, A:E.190, H2O.1, H2O.3
- 10 x MOH: METHANOL(Non-functional Binders)
MOH.8: 11 residues within 4Å:- Chain A: R.35, G.36, N.37, G.38, I.39, Y.81, S.92, N.97, A.98, A.99, I.100
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.37, A:G.38, A:S.92, A:A.98
MOH.9: 5 residues within 4Å:- Chain A: E.160, Y.217, N.280, F.281, S.282
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.217, A:F.281, A:S.282
MOH.10: 3 residues within 4Å:- Chain A: G.212, P.214, K.219
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.212
MOH.11: 1 residues within 4Å:- Chain A: S.5
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.5
- Water bridges: A:S.5, A:S.5
MOH.12: 5 residues within 4Å:- Chain A: N.21, R.35, Y.75, G.78, V.79
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.21, A:R.35, A:R.35
- Water bridges: A:N.21, A:D.32, A:D.32
MOH.13: 2 residues within 4Å:- Chain A: A.64, Y.66
1 PLIP interactions:1 interactions with chain A- Water bridges: A:Y.66
MOH.14: 2 residues within 4Å:- Chain A: Q.273, Y.274
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.273
MOH.15: 4 residues within 4Å:- Chain A: F.114, W.115, E.143, H.146
3 PLIP interactions:1 Ligand-Ligand interactions, 2 interactions with chain A- Water bridges: V.1
- Hydrogen bonds: A:W.115, A:E.143
MOH.16: 5 residues within 4Å:- Chain A: D.43, K.45, W.55, A.56, Y.66
1 PLIP interactions:1 interactions with chain A- Water bridges: A:A.56
MOH.17: 7 residues within 4Å:- Chain A: Y.81, Y.84, S.92, Y.93, I.100, L.144, V.148
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.92
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Juers, D.H. et al., The impact of cryosolution thermal contraction on proteins and protein crystals: volumes, conformation and order. Acta Crystallogr D Struct Biol (2018)
- Release Date
- 2018-09-19
- Peptides
- Thermolysin: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
SMTL ID : 6d5u.1
Hexagonal thermolysin cryocooled to 100 K with 50% methanol as cryoprotectant
Thermolysin
Related Entries With Identical Sequence
1kei.1 | 1kjo.1 | 1kjp.1 | 1kkk.1 | 1kl6.1 | 1kr6.1 | 1kro.1 | 1ks7.1 | 1kto.1 | 1y3g.1 | 2whz.1 | 2wi0.1 | 3dnz.1 | 3do0.1 | 3do1.1 | 3do2.1 | 3fb0.1 | 3fbo.1 | 3fgd.1 | 3flf.1 | 3fv4.1 | 3fvp.1 | 3fxp.1 | 3fxs.1 | 3ls7.1 | 3ms3.1 | 3msa.1 | 3msf.1 | 3msn.1 | 3n21.1 more...less...3nn7.1 | 3qgo.1 | 3qh1.1 | 3qh5.1 | 3ssb.1 | 3ssb.2 | 3t73.1 | 3t74.1 | 3t87.1 | 3t8c.1 | 3t8d.1 | 3t8f.1 | 3t8g.1 | 3t8h.1 | 4d91.1 | 4d9w.1 | 4h57.1 | 4mtw.1 | 4mwp.1 | 4mxj.1 | 4mzn.1 | 4n4e.1 | 4n5p.1 | 4n66.1 | 4oi5.1 | 4ow3.1 | 4tnl.1 | 5dlh.1 | 5dpe.1 | 5dpf.1 | 5fsj.1 | 5fsp.1 | 5fss.1 | 5js3.1 | 5jss.1 | 5jt9.1 | 5jvi.1 | 5jxn.1 | 5k7t.1 | 5l3u.1 | 5l41.1 | 5l8p.1 | 5lif.1 | 5lvd.1 | 5lwd.1 | 5m5f.1 | 5m69.1 | 5m9w.1 | 5ma7.1 | 5mnr.1 | 5n2t.1 | 5n2x.1 | 5n2z.1 | 5n31.1 | 5n34.1 | 5n3v.1 | 5n3y.1 | 5o8n.1 | 5onp.1 | 5onq.1 | 5onr.1 | 5t9i.1 | 5t9k.1 | 5t9q.1 | 5tac.1 | 5tad.1 | 5tae.1 | 5tai.1 | 5taj.1 | 5tak.1 | 5un3.1 | 5uu7.1 | 5uu8.1 | 5uu9.1 | 5uua.1 | 5uub.1 | 5uuc.1 | 5uud.1 | 5uue.1 | 5wr2.1 | 5wr3.1 | 5wr4.1 | 5wr5.1 | 5wr6.1 | 6d5n.1 | 6d5o.1 | 6d5p.1 | 6d5q.1 | 6d5r.1 | 6d5s.1 | 6d5t.1 | 6fj2.1 | 6ghx.1 | 6ig7.1 | 6lzn.1 | 6lzo.1 | 6n4w.1 | 6n4z.1 | 6qar.1 | 6qf2.1 | 6qf3.1 | 6sb9.1 | 6sbk.1 | 6sc0.1 | 6sc1.1 | 6sc3.1 | 6sck.1 | 6scu.1 | 6sel.1 | 6y4i.1 | 6yi6.1 | 6ymr.1 | 6yms.1 | 6zhj.1 | 7akn.1 | 8zm4.1 | 8zm5.1 | 8zm6.1 | 9f56.1