SMTL ID : 6eh7.1

F11 Human T-Cell Receptor specific for influenza virus haaemagglutinin epitope PKYVKQNTLKLAT carried by Human Leukocyte Antigen HLA-DR0101

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

hetero-1-1-mer

Ligands

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: H.82, M.83, S.84 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.82, A:S.84 Water bridges: A:M.83 EDO.2: 5 residues within 4Å: Chain A: N.113, I.114, Q.115, F.169, K.170 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.170 Water bridges: A:N.113, A:K.170 EDO.3: 6 residues within 4Å: Chain A: K.132, S.133, S.178, N.179 Chain B: F.124, L.142 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.132, A:S.133, A:S.178 Water bridges: A:S.178 EDO.4: 7 residues within 4Å: Chain A: S.147, I.156, A.188, F.189, N.190, N.191, S.192 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.147, A:N.191, A:S.192 EDO.5: 7 residues within 4Å: Chain A: M.164, R.165, S.166 Chain B: S.164, G.165, R.191, V.192 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.191, A:R.165, A:S.166 Water bridges: B:S.193 EDO.6: 7 residues within 4Å: Chain A: L.111, P.112, I.114, D.141, S.142, K.159, N.172 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.142, A:K.159 Water bridges: A:N.172 EDO.7: 5 residues within 4Å: Chain A: Q.148, S.149, Y.155, I.156 Chain B: L.173 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.149, A:I.156 EDO.9: 5 residues within 4Å: Chain A: C.160 Chain B: C.167, T.168, P.170 Ligands: PEG.8 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.168, B:T.168 EDO.10: 5 residues within 4Å: Chain B: R.35, D.61, Y.63, N.83, Q.84 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.35, B:D.61, B:N.83, B:Q.84 EDO.11: 5 residues within 4Å: Chain B: L.113, N.114, E.218, W.219, T.220 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.220, B:T.220, B:Q.221 Water bridges: B:D.112, B:L.113 EDO.12: 6 residues within 4Å: Chain B: T.85, A.86, L.87, R.106, L.107, T.108 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.149 EDO.13: 5 residues within 4Å: Chain B: Y.46, K.56, S.60, D.61, Y.63 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.46, B:K.56, B:D.61, B:Y.63, B:Y.63

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.8: 5 residues within 4Å: Chain A: H.109, D.158, K.159, V.161 Ligands: EDO.9 4 PLIP interactions: 4 interactions with chain A Water bridges: A:I.110, A:I.110, A:D.158, A:K.159 PEG.14: 9 residues within 4Å: Chain B: I.11, T.12, K.13, K.16, L.113, G.212, L.213, S.214, D.217 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.12, B:K.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holland, C.J. et al., In Silicoand Structural Analyses Demonstrate That Intrinsic Protein Motions Guide T Cell Receptor Complementarity Determining Region Loop Flexibility. Front Immunol (2018)

Release Date

2018-04-18

Peptides

Human T Cell Receptor Alpha Chain: A
Human T Cell Receptor Beta Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Human T Cell Receptor Alpha Chain

Human T Cell Receptor Beta Chain

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