SMTL ID : 6fr9.1

F11 T-Cell Receptor Recognising PKYVKQNTLKLAT Peptide Presented by HLA-DR*0101

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

hetero-1-1-mer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 9 residues within 4Å: Chain A: S.147, Q.148, K.150, I.156, A.188, F.189, N.190, N.191, S.192 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.147, A:K.150, A:K.150, A:N.191, A:S.192 EDO.2: 4 residues within 4Å: Chain A: K.132, S.133, W.177 Chain B: L.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.133 Water bridges: A:S.133, A:W.177 EDO.3: 8 residues within 4Å: Chain A: L.111, P.112, I.114, D.141, S.142, K.159, N.172 Ligands: EDO.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.112, A:K.159 Water bridges: A:I.114, A:K.159, A:N.172 EDO.4: 2 residues within 4Å: Chain A: H.109, K.159 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.109 Water bridges: A:D.158, A:D.158 EDO.5: 7 residues within 4Å: Chain A: S.14, E.15, L.111, P.112, N.113, S.142 Ligands: EDO.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.15, A:S.142, A:S.142 EDO.6: 5 residues within 4Å: Chain B: I.11, T.12, K.13, L.113, D.217 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.13 Water bridges: B:I.11, B:I.11, B:D.217 EDO.7: 5 residues within 4Å: Chain B: W.219, T.220, Q.221, D.222, R.223 3 PLIP interactions: 3 interactions with chain B Water bridges: B:T.220, B:Q.221, B:K.225 EDO.8: 3 residues within 4Å: Chain B: W.156, K.160, E.161 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.161

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 7 residues within 4Å: Chain B: V.151, E.152, L.153, D.169, P.170, P.172, L.186 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:L.153, B:L.153, B:D.169 Water bridges: B:R.106, B:V.151, A:N.41, A:N.41

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 6 residues within 4Å: Chain B: T.85, A.86, L.87, R.106, L.107, T.108 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:A.86, B:L.107 Water bridges: B:L.87, B:L.87, B:R.106, B:D.149 Salt bridges: B:R.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holland, C.J. et al., In Silicoand Structural Analyses Demonstrate That Intrinsic Protein Motions Guide T Cell Receptor Complementarity Determining Region Loop Flexibility. Front Immunol (2018)

Release Date

2018-04-18

Peptides

T-Cell Receptor F11 alpha chain: A
T-Cell Receptor F11 beta chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

T-Cell Receptor F11 alpha chain

T-Cell Receptor F11 beta chain

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