SMTL ID : 6fur.1 (1 other biounit)

F11 T-Cell Receptor Recognising PKYVKQNTLKLAT Peptide Presented by HLA-DR*0101

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

hetero-1-1-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 9 residues within 4Å: Chain A: I.114, N.116, P.117, D.118, D.139, F.169, K.170, S.171 Ligands: EDO.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.116, A:D.118, A:K.170 EDO.2: 3 residues within 4Å: Chain A: N.116, F.169 Ligands: EDO.1 No protein-ligand interaction detected (PLIP) EDO.6: 3 residues within 4Å: Chain B: W.156, K.160, E.161 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.161 EDO.7: 6 residues within 4Å: Chain B: M.19, S.64, V.65, S.66, S.74, S.76 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.74

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 1 residues within 4Å: Chain A: H.10 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.10 SO4.8: 5 residues within 4Å: Chain B: E.161, V.162, H.163, S.164 Ligands: GOL.13 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.163, B:S.164 Salt bridges: B:H.163 SO4.9: 3 residues within 4Å: Chain B: G.159, H.203, R.205 4 PLIP interactions: 4 interactions with chain B Water bridges: B:G.159, B:G.159 Salt bridges: B:H.203, B:R.205 SO4.10: 5 residues within 4Å: Chain B: L.113, N.114, E.218, W.219, T.220 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.218, B:T.220

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain A: S.12, S.14 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.14, A:S.14 Water bridges: A:S.14 GOL.5: 5 residues within 4Å: Chain A: K.132, S.133, W.177, S.178, N.179 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.132, A:S.133, A:S.133 Water bridges: A:S.178 GOL.11: 4 residues within 4Å: Chain B: P.7, R.8, N.9, Y.211 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.8, B:N.9, B:N.9, B:N.9 GOL.12: 8 residues within 4Å: Chain B: N.9, R.10, I.11, G.212, L.213, S.214, D.217, T.228 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:I.11, B:I.11, B:D.217, B:T.228 GOL.13: 5 residues within 4Å: Chain B: V.157, V.162, V.192, F.196 Ligands: SO4.8 2 PLIP interactions: 2 interactions with chain B Water bridges: B:S.164, B:S.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holland, C.J. et al., In Silicoand Structural Analyses Demonstrate That Intrinsic Protein Motions Guide T Cell Receptor Complementarity Determining Region Loop Flexibility. Front Immunol (2018)

Release Date

2018-04-18

Peptides

Human F11 T-Cell Receptor alpha chain: A
Human F11 T-Cell Receptor: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Human F11 T-Cell Receptor alpha chain

Human F11 T-Cell Receptor

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