SMTL ID : 6fra.1

F11 T-Cell Receptor Recognising PKYVKQNTLKLAT Peptide Presented by HLA-DR*0101

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

hetero-1-1-mer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: H.82 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Water bridges: A:M.83, A:R.164 EDO.2: 7 residues within 4Å: Chain A: H.82, M.83, S.84, D.162, R.164, K.169 Ligands: EDO.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:M.83, A:S.84, A:S.84, A:D.162, A:D.162, A:R.164 Water bridges: A:S.84, A:K.169 EDO.3: 4 residues within 4Å: Chain A: Y.39, N.61, S.84, D.85 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.39, A:Y.39, A:D.85 Water bridges: A:K.78 EDO.4: 6 residues within 4Å: Chain A: G.43, L.44 Chain B: F.89, F.101, G.102, S.103 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.44 EDO.5: 5 residues within 4Å: Chain A: S.14, E.15, L.110, P.111, N.112 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.15, A:L.110 EDO.6: 8 residues within 4Å: Chain A: F.34, A.92, V.93, K.99, I.100, F.101 Chain B: Y.97, Y.99 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Y.97, A:I.100, A:I.100 EDO.7: 4 residues within 4Å: Chain A: S.141, Q.142, T.143, N.144 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.141 EDO.10: 8 residues within 4Å: Chain A: D.97, D.98 Chain B: R.30, S.93, D.94, E.95, S.96, Y.97 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.93, B:S.93, B:Y.97, A:D.97 EDO.11: 6 residues within 4Å: Chain B: R.35, D.61, G.62, Y.63, N.83, Q.84 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.35, B:D.61, B:N.83, B:Q.84 EDO.12: 3 residues within 4Å: Chain B: V.162, H.163, S.164 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.163, B:S.164

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 4 residues within 4Å: Chain A: F.67, K.68, K.69, S.70 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.69, A:S.70, A:E.71 SO4.9: 3 residues within 4Å: Chain A: F.198, P.200, S.201 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.201 SO4.13: 1 residues within 4Å: Chain B: R.201 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.201 SO4.14: 6 residues within 4Å: Chain B: T.4, Q.5, T.6, E.21, C.22, S.23 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:C.22, B:S.23, B:S.23 SO4.15: 6 residues within 4Å: Chain B: T.85, A.86, L.87, R.106, L.107, T.108 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.86, B:A.86, B:L.107 Salt bridges: B:R.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holland, C.J. et al., In Silicoand Structural Analyses Demonstrate That Intrinsic Protein Motions Guide T Cell Receptor Complementarity Determining Region Loop Flexibility. Front Immunol (2018)

Release Date

2018-04-18

Peptides

Human T-Cell Receptor F11 alpha Chain: A
Human T-Cell Receptor F11 beta Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Human T-Cell Receptor F11 alpha Chain

Human T-Cell Receptor F11 beta Chain

Related Entries With Identical Sequence