SMTL ID : 6fum.1

F11 T-Cell Receptor Recognising PKYVKQNTLKLAT Peptide Presented by HLA-DR*0101

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

hetero-1-1-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: K.132, S.133, W.177, S.178 Chain B: F.124, L.142 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.133, A:S.178 Water bridges: A:K.132, A:K.132, A:S.178 EDO.2: 7 residues within 4Å: Chain A: M.164, R.165, S.166 Chain B: S.164, G.165, R.191, V.192 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.164, B:R.191, A:R.165, A:S.166 EDO.4: 7 residues within 4Å: Chain A: T.157, D.158 Chain B: D.169, Q.171, P.172, L.173, S.185 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.169, B:L.173, B:S.185, A:D.158, A:D.158 Water bridges: B:Q.171 EDO.5: 5 residues within 4Å: Chain B: L.113, N.114, E.218, W.219, T.220 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.220, B:T.220, B:Q.221

1 x P4G: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE(Non-covalent)

P4G.3: 6 residues within 4Å: Chain A: A.86, R.107, L.108, H.109, K.159, V.161 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.86, A:R.107 Water bridges: A:I.110, A:V.161

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 7 residues within 4Å: Chain B: T.85, A.86, L.87, R.106, L.107, T.108, D.149 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:A.86, B:A.86, B:L.107, B:D.149 Water bridges: B:L.87, B:L.87 Salt bridges: B:R.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holland, C.J. et al., In Silicoand Structural Analyses Demonstrate That Intrinsic Protein Motions Guide T Cell Receptor Complementarity Determining Region Loop Flexibility. Front Immunol (2018)

Release Date

2018-04-18

Peptides

Human F11 T-Cell Receptor alpha chain: A
Human F11 T-Cell Receptor beta chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Human F11 T-Cell Receptor alpha chain

Human F11 T-Cell Receptor beta chain

Related Entries With Identical Sequence