SMTL ID : 6fuq.1

F11 T-Cell Receptor Recognising PKYVKQNTLKLAT Peptide Presented by HLA-DR*0101

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

25 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: S.166, M.167, D.168 Ligand excluded by PLIP EDO.2: 3 residues within 4Å: Chain A: K.68, K.69, S.70 Ligand excluded by PLIP EDO.3: 5 residues within 4Å: Chain A: E.15, G.16, S.80, A.81, H.82 Ligand excluded by PLIP EDO.4: 5 residues within 4Å: Chain A: Y.39, N.61, K.78, S.84, D.85 Ligand excluded by PLIP EDO.5: 8 residues within 4Å: Chain A: L.111, P.112, I.114, D.141, S.142, K.159, N.172 Ligands: EDO.10 Ligand excluded by PLIP EDO.6: 4 residues within 4Å: Chain A: V.121, C.185, F.200, P.201 Ligand excluded by PLIP EDO.7: 5 residues within 4Å: Chain A: Q.2, E.95, Q.96, D.97 Chain B: Y.97 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: A.86, A.87, R.107, L.108, H.109 Ligands: PEG.13 Ligand excluded by PLIP EDO.9: 1 residues within 4Å: Chain A: P.79 Ligand excluded by PLIP EDO.10: 7 residues within 4Å: Chain A: S.14, E.15, L.111, P.112, N.113, S.142 Ligands: EDO.5 Ligand excluded by PLIP EDO.11: 5 residues within 4Å: Chain A: Q.6, G.8, S.9, K.104, G.105 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain A: D.197, T.198, F.199 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain B: R.17, S.64, V.65, S.66, S.74, S.76 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain B: V.3, T.4, Q.5, G.102, S.103 Ligand excluded by PLIP EDO.19: 5 residues within 4Å: Chain B: L.113, N.114, E.218, W.219, T.220 Ligand excluded by PLIP EDO.20: 9 residues within 4Å: Chain B: R.35, I.59, D.61, G.62, Y.63, I.81, N.83, Q.84 Ligands: EDO.23 Ligand excluded by PLIP EDO.21: 9 residues within 4Å: Chain A: D.97, D.98 Chain B: R.30, F.49, S.93, D.94, E.95, S.96, Y.97 Ligand excluded by PLIP EDO.22: 3 residues within 4Å: Chain B: W.156, K.160, E.161 Ligand excluded by PLIP EDO.23: 5 residues within 4Å: Chain B: R.35, R.43, I.59, N.83 Ligands: EDO.20 Ligand excluded by PLIP EDO.24: 5 residues within 4Å: Chain B: V.151, D.169, P.170, P.172, L.186 Ligand excluded by PLIP EDO.25: 6 residues within 4Å: Chain B: A.1, D.2, T.4, S.23, Q.24, T.25 Ligand excluded by PLIP EDO.26: 5 residues within 4Å: Chain B: G.57, E.58, I.59, S.60, D.61 Ligand excluded by PLIP EDO.27: 4 residues within 4Å: Chain B: P.200, W.236, G.237, R.238 Ligand excluded by PLIP EDO.28: 5 residues within 4Å: Chain B: Y.46, K.56, S.60, D.61, Y.63 Ligand excluded by PLIP EDO.29: 3 residues within 4Å: Chain B: V.162, H.163, S.164 Ligand excluded by PLIP

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.13: 6 residues within 4Å: Chain A: H.109, D.158, K.159, V.161 Ligands: EDO.8, SO4.16 5 PLIP interactions: 5 interactions with chain A Water bridges: A:I.110, A:I.110, A:N.145, A:K.159, A:V.161 PEG.14: 6 residues within 4Å: Chain A: I.114, Q.115, N.116, D.168, F.169, K.170 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.115, A:N.116, A:N.116, A:K.170, A:K.170 PEG.15: 7 residues within 4Å: Chain A: L.56, E.64, A.65, E.66, K.68, H.75, T.77 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.64, A:E.66, A:K.68 Water bridges: A:H.75

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.16: 2 residues within 4Å: Chain A: H.10 Ligands: PEG.13 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.158, A:D.158 Salt bridges: A:H.10 SO4.30: 6 residues within 4Å: Chain B: T.85, A.86, L.87, R.106, L.107, T.108 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:T.85, B:A.86, B:L.107 Water bridges: B:L.87, B:L.87, B:R.106, B:R.106 Salt bridges: B:R.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holland, C.J. et al., In Silicoand Structural Analyses Demonstrate That Intrinsic Protein Motions Guide T Cell Receptor Complementarity Determining Region Loop Flexibility. Front Immunol (2018)

Release Date

2018-04-18

Peptides

Human F11 T-Cell Receptor: A
Human F11 T-Cell Receptor beta chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Human F11 T-Cell Receptor

Human F11 T-Cell Receptor beta chain

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