- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.08 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 3 residues within 4Å:- Chain A: N.11, S.13, A.14
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.11
NAG.5: 4 residues within 4Å:- Chain A: L.279, E.282, N.286, F.323
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.279, A:E.282
- Hydrogen bonds: A:E.282, A:E.282, A:N.286, A:F.323, A:F.323
NAG.6: 3 residues within 4Å:- Chain A: N.141, T.143, L.144
3 PLIP interactions:3 interactions with chain A- Water bridges: A:N.141, A:N.141, A:E.142
NAG.7: 7 residues within 4Å:- Chain A: F.155, G.156, G.157, N.161, L.162, T.163, Q.213
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.162
- Hydrogen bonds: A:T.163, A:Q.213
- Water bridges: A:N.161, A:N.161, A:L.162
NAG.8: 4 residues within 4Å:- Chain A: H.118, A.132, F.133, N.182
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.182
- Water bridges: A:F.133, A:S.184, A:R.257
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.9: 3 residues within 4Å:- Chain A: R.97, T.99, R.100
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:T.99, A:T.99, A:R.100
- Water bridges: A:R.97, A:R.97, A:R.97
- Salt bridges: A:R.97, A:R.100
PO4.20: 3 residues within 4Å:- Ligands: SNP.13, SNP.14, PO4.21
No protein-ligand interaction detected (PLIP)PO4.21: 3 residues within 4Å:- Chain A: T.242
- Ligands: SNP.13, PO4.20
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.242, A:T.242
- Water bridges: A:T.242
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 6 residues within 4Å:- Chain A: D.206, R.208, P.229, D.230, D.231, F.232
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.206
GOL.11: 2 residues within 4Å:- Chain A: Q.224, F.225
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.224
GOL.12: 4 residues within 4Å:- Chain A: F.145, M.216, D.217, R.220
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:M.216, A:R.220
- Water bridges: A:D.217
GOL.17: 8 residues within 4Å:- Chain A: F.69, A.77, F.121, T.192, E.196, F.199
- Ligands: HEM.1, SNP.13
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.196
- Water bridges: A:A.73, A:A.77
GOL.18: 6 residues within 4Å:- Chain A: Y.151, F.155, E.167, F.170, K.171, H.251
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Y.151, A:K.171
- Water bridges: A:R.154, A:R.154, A:E.167, A:E.167
GOL.19: 7 residues within 4Å:- Chain A: V.186, D.187, R.257, D.268, T.270, S.271, K.283
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.257, A:D.268, A:T.270, A:K.283
- Water bridges: A:R.257
- 4 x SNP: 1-(ISOPROPYLAMINO)-3-(1-NAPHTHYLOXY)-2-PROPANOL(Non-covalent)
SNP.13: 12 residues within 4Å:- Chain A: D.70, F.191, T.192, G.195, F.199, S.240, G.241, V.244
- Ligands: SNP.14, GOL.17, PO4.20, PO4.21
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.199, A:V.244
- Hydrogen bonds: A:G.241
- Water bridges: A:S.240, A:S.240, A:T.242
SNP.14: 9 residues within 4Å:- Chain A: F.76, F.191, V.244, F.274, P.277, M.280, V.315
- Ligands: SNP.13, PO4.20
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.191, A:P.277, A:V.315
- pi-Stacking: A:F.76, A:F.76
SNP.15: 4 residues within 4Å:- Chain A: R.220, Q.224, F.225, R.227
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.225
- pi-Cation interactions: A:R.220
SNP.16: 6 residues within 4Å:- Chain A: K.290, P.294, V.298, R.301, P.324, Y.325
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.298
- pi-Cation interactions: A:R.301
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Escudero, M. et al., Structural Insights into the Substrate Promiscuity of a Laboratory-Evolved Peroxygenase. Acs Chem.Biol. (2018)
- Release Date
- 2018-12-12
- Peptides
- Aromatic peroxygenase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.08 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 4 x SNP: 1-(ISOPROPYLAMINO)-3-(1-NAPHTHYLOXY)-2-PROPANOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Escudero, M. et al., Structural Insights into the Substrate Promiscuity of a Laboratory-Evolved Peroxygenase. Acs Chem.Biol. (2018)
- Release Date
- 2018-12-12
- Peptides
- Aromatic peroxygenase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A