SMTL ID : 6eqq.1

Human butyrylcholinesterase in complex with huprine 19

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUL.1: 6 residues within 4Å: Chain A: P.335, G.336, F.337, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.336

1 x NAG- FUL: beta-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUL.2: 5 residues within 4Å: Chain A: E.238, N.241, N.245, F.278, P.281 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.281 Hydrogen bonds: A:N.245, A:F.278, A:N.245

1 x H19: huprine 19(Non-covalent)

H19.3: 15 residues within 4Å: Chain A: D.70, S.72, G.116, G.117, T.120, S.198, W.231, L.286, S.287, V.288, F.329, Y.332, F.398 Ligands: BR.8, UNL.20 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:T.120, A:V.288, A:F.329, A:Y.332 Hydrogen bonds: A:D.70, A:S.287 Water bridges: A:Q.71

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.106, N.188 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.188 NAG.5: 4 residues within 4Å: Chain A: R.465, K.469, E.482, N.485 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.469, A:E.482 Hydrogen bonds: A:R.465, A:N.485 NAG.6: 2 residues within 4Å: Chain A: R.14, N.57 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.14 NAG.7: 2 residues within 4Å: Chain A: N.256, T.258 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.256

1 x BR: BROMIDE ION(Non-covalent)

BR.8: 5 residues within 4Å: Chain A: G.116, G.117, S.198, H.438 Ligands: H19.3 Ligand excluded by PLIP

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 3 residues within 4Å: Chain A: K.323, Y.420, R.515 Ligand excluded by PLIP CL.10: 1 residues within 4Å: Chain A: Y.385 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: R.242, V.288 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain A: S.487, T.488, T.508 Ligand excluded by PLIP

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.13: 4 residues within 4Å: Chain A: Q.316, G.413, N.414, N.415 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.316, A:N.414, A:N.415 Water bridges: A:N.415 SO4.14: 2 residues within 4Å: Chain A: R.347, Q.351 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.351, A:Q.351 Salt bridges: A:R.347 SO4.15: 5 residues within 4Å: Chain A: G.39, R.40, K.262, R.265, N.266 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.266 Salt bridges: A:K.262, A:R.265

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.16: 6 residues within 4Å: Chain A: L.208, L.209, H.214, Q.311, F.312, K.313 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.208, A:H.214 GOL.17: 6 residues within 4Å: Chain A: L.18, L.29, Y.61, W.98, D.129, K.131 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.98, A:K.131 GOL.18: 3 residues within 4Å: Chain A: Y.456, T.457, K.458 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.458, A:K.458, A:K.458 GOL.19: 4 residues within 4Å: Chain A: K.513, R.515, A.516, Q.518 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.515, A:R.515, A:A.516, A:Q.518 Water bridges: A:T.512, A:T.512, A:K.513, A:K.513, A:R.515

1 x UNL: UNKNOWN LIGAND

UNL.20: 4 residues within 4Å: Chain A: P.285, F.329, Y.332 Ligands: H19.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.329, A:Y.332 Water bridges: A:P.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rosenberry, T.L. et al., Comparison of the Binding of Reversible Inhibitors to Human Butyrylcholinesterase and Acetylcholinesterase: A Crystallographic, Kinetic and Calorimetric Study. Molecules (2017)

Release Date

2017-12-13

Peptides

Cholinesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cholinesterase

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