SMTL ID : 6ft7.2 (1 other biounit)

Crystal structure of CLK3 in complex with compound 8a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

7 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: N.79, K.83 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: Q.320, D.323, H.345 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: V.96, L.97, R.193 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: H.215, Q.251, T.252 Ligand excluded by PLIP IOD.5: 7 residues within 4Å: Chain A: H.19, L.20, G.44, K.45, I.63, I.64, R.65 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: R.278, K.279, K.281 Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain A: K.85, S.99, D.100 Ligand excluded by PLIP

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 2 residues within 4Å: Chain A: K.82, W.101 No protein-ligand interaction detected (PLIP) EDO.9: 2 residues within 4Å: Chain A: K.124, F.128 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.124 EDO.10: 1 residues within 4Å: Chain A: S.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.9 EDO.11: 3 residues within 4Å: Chain A: H.135, V.187, K.188 6 PLIP interactions: 6 interactions with chain A Water bridges: A:H.135, A:V.187, A:T.190, A:T.190, A:T.190, A:E.355 EDO.12: 4 residues within 4Å: Chain A: F.43, K.62, D.196 Ligands: E6Q.17 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.196 Water bridges: A:N.164 EDO.13: 2 residues within 4Å: Chain A: R.75, W.101 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.75, A:R.75 EDO.14: 2 residues within 4Å: Chain A: D.203, H.204 No protein-ligand interaction detected (PLIP) EDO.15: 4 residues within 4Å: Chain A: P.130, P.132, E.184, L.312 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.184 Water bridges: A:L.133, A:Y.244 EDO.16: 4 residues within 4Å: Chain A: R.256, V.289, W.290, D.291 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.290

1 x E6Q: 3-phenyl-1~{H}-pyrrolo[3,4-g]indol-8-one(Non-covalent)

E6Q.17: 12 residues within 4Å: Chain A: L.38, G.39, E.40, F.43, V.46, A.60, F.112, E.113, L.114, L.115, L.166 Ligands: EDO.12 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.43, A:V.46, A:A.60, A:L.166 Hydrogen bonds: A:L.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walter, A. et al., Molecular structures of cdc2-like kinases in complex with a new inhibitor chemotype. PLoS ONE (2018)

Release Date

2018-05-16

Peptides

Dual specificity protein kinase CLK3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Dual specificity protein kinase CLK3

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