SMTL ID : 6z54.1

Crystal structure of CLK3 in complex with macrocycle ODS2003178

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: F.247, T.248, Q.251 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.248, A:Q.251 Water bridges: A:T.248 EDO.2: 4 residues within 4Å: Chain A: H.207, G.226, W.227 Ligands: EDO.13 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.227, A:W.227 EDO.3: 3 residues within 4Å: Chain A: W.227, A.228, P.333 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.226, A:A.228 EDO.4: 4 residues within 4Å: Chain A: L.288, V.289, W.290, E.292 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.288, A:W.290, A:E.292, A:E.292 Water bridges: A:E.292 EDO.5: 7 residues within 4Å: Chain A: E.254, R.256, E.257, W.290, D.291, S.294, G.297 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.254, A:D.291, A:D.291, A:S.294 EDO.6: 4 residues within 4Å: Chain A: D.323, R.326, R.327, E.330 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.323, A:E.330 EDO.7: 7 residues within 4Å: Chain A: V.12, L.20, V.21, C.22, R.23, D.26, F.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.23, A:D.26 EDO.8: 3 residues within 4Å: Chain A: R.65, K.69, Y.70 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.65, A:R.65, A:K.69, A:Y.70 EDO.9: 6 residues within 4Å: Chain A: F.247, T.248, L.249, I.265, C.304, Y.310 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.248 Water bridges: A:Q.251, A:Y.310, A:Y.310 EDO.10: 3 residues within 4Å: Chain A: P.270, S.271, H.272 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.271, A:H.272, A:H.272 Water bridges: A:I.269, A:S.271 EDO.11: 3 residues within 4Å: Chain A: L.266, K.308, R.326 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.266, A:K.308, A:R.326 EDO.12: 4 residues within 4Å: Chain A: E.263, K.264, G.267, P.306 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.264 EDO.13: 3 residues within 4Å: Chain A: H.206, H.207 Ligands: EDO.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.206, A:H.207, A:H.207

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.14: 2 residues within 4Å: Chain A: K.279, K.281 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.281 Salt bridges: A:K.279, A:K.281

1 x Q7H: 11,15-Dimethyl-6-(oxan-4-yloxy)-8-oxa-2,11,15,19,21,23-hexazatetracyclo[15.6.1.13,7.020,24]pentacosa-1(23),3(25),4,6,17,20(24),21-heptaen-10-one(Non-covalent)

Q7H.15: 16 residues within 4Å: Chain A: L.38, G.39, F.43, V.46, A.60, V.96, F.112, E.113, L.114, L.115, N.118, E.121, E.163, N.164, L.166, D.196 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.46, A:L.166 Hydrogen bonds: A:E.113, A:L.115, A:N.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Crystal structure of CLK3 in complex with macrocycle ODS2003178. To Be Published

Release Date

2020-06-03

Peptides

Dual specificity protein kinase CLK3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity protein kinase CLK3

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