SMTL ID : 6z52.1 (1 other biounit)

Crystal structure of CLK3 in complex with macrocycle ODS2003136

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: K.82, W.101 Ligands: IOD.7 No protein-ligand interaction detected (PLIP) EDO.2: 5 residues within 4Å: Chain A: N.118, F.120, E.121, K.124 Ligands: Q8T.15 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.118, A:N.118 EDO.3: 5 residues within 4Å: Chain A: R.327, E.330, Q.335, R.336, I.337 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.327, A:I.337 EDO.4: 1 residues within 4Å: Chain A: R.278 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.277, A:R.278 EDO.5: 2 residues within 4Å: Chain A: R.75, W.101 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.75

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain A: R.256, W.290, D.291 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain A: H.19, L.20, G.44, K.45, I.63 Ligand excluded by PLIP

7 x IOD: IODIDE ION(Non-functional Binders)

IOD.7: 4 residues within 4Å: Chain A: M.98, S.99, D.100 Ligands: EDO.1 Ligand excluded by PLIP IOD.8: 4 residues within 4Å: Chain A: R.278, K.279, Q.280, K.281 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain A: Q.320, D.323 Ligand excluded by PLIP IOD.11: 2 residues within 4Å: Chain A: Q.251, T.252 Ligand excluded by PLIP IOD.12: 2 residues within 4Å: Chain A: V.96, L.97 Ligand excluded by PLIP IOD.13: 3 residues within 4Å: Chain A: R.7, Q.29, F.104 Ligand excluded by PLIP IOD.14: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x Q8T: 11,15-dimethyl-6-(4-methylpiperazin-1-yl)-8-oxa-2,11,15,19,21,23-hexazatetracyclo[15.6.1.13,7.020,24]pentacosa-1(23),3(25),4,6,17,20(24),21-heptaen-10-one(Non-covalent)

Q8T.15: 17 residues within 4Å: Chain A: L.38, E.40, F.43, V.46, A.60, K.62, F.112, E.113, L.114, L.115, N.118, E.121, E.163, N.164, L.166, D.196 Ligands: EDO.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.43, A:A.60, A:L.166 Hydrogen bonds: A:E.113, A:L.115, A:N.118 Salt bridges: A:E.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Crystal structure of CLK3 in complex with macrocycle ODS2003136. To Be Published

Release Date

2020-06-03

Peptides

Dual specificity protein kinase CLK3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity protein kinase CLK3

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