SMTL ID : 6z52.2 (1 other biounit)

Crystal structure of CLK3 in complex with macrocycle ODS2003136

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: F.120, K.124, F.128 No protein-ligand interaction detected (PLIP) EDO.2: 6 residues within 4Å: Chain A: C.22, I.24, I.34, N.37, K.45, V.47 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.45, A:K.45 EDO.3: 5 residues within 4Å: Chain A: N.118, F.120, E.121, K.124 Ligands: Q8T.15 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.118, A:K.124 Water bridges: A:K.124, A:E.125 EDO.4: 7 residues within 4Å: Chain A: E.254, R.256, E.257, V.260, W.290, D.291, S.294 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.291, A:D.291 EDO.5: 1 residues within 4Å: Chain A: R.278 No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 1 residues within 4Å: Chain A: L.97 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain A: H.19, L.20, G.44, K.45, I.63 Ligand excluded by PLIP

7 x IOD: IODIDE ION(Non-functional Binders)

IOD.7: 3 residues within 4Å: Chain A: R.7, Q.29, F.104 Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain A: Q.320, D.323 Ligand excluded by PLIP IOD.10: 3 residues within 4Å: Chain A: K.85, S.99, D.100 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain A: R.256, W.290, D.291 Ligand excluded by PLIP IOD.12: 2 residues within 4Å: Chain A: Q.251, T.252 Ligand excluded by PLIP IOD.13: 4 residues within 4Å: Chain A: R.278, K.279, Q.280, K.281 Ligand excluded by PLIP IOD.14: 1 residues within 4Å: Chain A: N.79 Ligand excluded by PLIP

1 x Q8T: 11,15-dimethyl-6-(4-methylpiperazin-1-yl)-8-oxa-2,11,15,19,21,23-hexazatetracyclo[15.6.1.13,7.020,24]pentacosa-1(23),3(25),4,6,17,20(24),21-heptaen-10-one(Non-covalent)

Q8T.15: 16 residues within 4Å: Chain A: L.38, E.40, F.43, V.46, A.60, K.62, F.112, E.113, L.114, L.115, N.118, E.121, E.163, N.164, L.166 Ligands: EDO.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.46, A:L.166 Hydrogen bonds: A:E.113, A:L.115, A:N.118 Water bridges: A:D.196 Salt bridges: A:E.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Crystal structure of CLK3 in complex with macrocycle ODS2003136. To Be Published

Release Date

2020-06-03

Peptides

Dual specificity protein kinase CLK3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Dual specificity protein kinase CLK3

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