SMTL ID : 6ytw.2 (1 other biounit)

CLK3 bound with benzothiazole Tg003 (Cpd 2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: R.65, K.69, Y.70 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.70 Water bridges: A:K.69, A:K.69 Salt bridges: A:R.65, A:K.69

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: R.278, K.279, K.281 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.278, A:R.278, A:K.279, A:K.281 EDO.3: 5 residues within 4Å: Chain A: E.254, N.255, K.279, K.281, Y.282 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.254, A:E.254, A:N.255, A:K.279, A:K.279, A:K.281, A:Y.282 EDO.4: 1 residues within 4Å: Chain A: R.217 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.217, A:R.217 EDO.5: 6 residues within 4Å: Chain A: F.120, F.128, E.242, G.246, F.247, T.248 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.246, A:T.248 EDO.6: 8 residues within 4Å: Chain A: F.247, T.248, L.249, Q.251, I.265, N.303, C.304, Y.310 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.251 EDO.7: 4 residues within 4Å: Chain A: P.268, I.269, P.270, S.271 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.268, A:S.271, A:S.271 Water bridges: A:H.272 EDO.8: 4 residues within 4Å: Chain A: Q.320, D.323, H.345, P.346 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.320 EDO.9: 4 residues within 4Å: Chain A: Q.335, R.336, T.338, E.341 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.341 EDO.10: 5 residues within 4Å: Chain A: E.163, N.164, L.166, A.195 Ligands: EAE.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.164 Water bridges: A:N.118

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 3 residues within 4Å: Chain A: H.206, T.208, T.209 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.206, A:T.209, A:T.209, A:T.209

1 x EAE: (1~{Z})-1-(3-ethyl-5-methoxy-1,3-benzothiazol-2-ylidene)propan-2-one(Non-covalent)

EAE.12: 13 residues within 4Å: Chain A: L.38, F.43, V.46, A.60, K.62, V.96, F.112, E.113, L.114, L.115, G.116, L.166 Ligands: EDO.10 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.43, A:A.60, A:V.96, A:F.112, A:L.166 Hydrogen bonds: A:K.62, A:L.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schroder, M. et al., DFG-1 Residue Controls Inhibitor Binding Mode and Affinity, Providing a Basis for Rational Design of Kinase Inhibitor Selectivity. J.Med.Chem. (2020)

Release Date

2020-07-15

Peptides

Dual specificity protein kinase CLK3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Dual specificity protein kinase CLK3

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