SMTL ID : 6fve.1

Macrophage Migration Inhibitory Factor (MIF) with Covalently Bound FITC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

homo-trimer

Ligands

3 x 6B9: 2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)-5-[(E)-(sulfanylmethylidene)amino]benzoic acid(Covalent)

6B9.1: 8 residues within 4Å: Chain A: P.1, K.32, Y.36, I.64, A.103, W.108, F.113 Chain C: Y.95 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.36, A:I.64, A:I.64, A:F.113, A:F.113, A:F.113, A:F.113 Salt bridges: A:K.32 pi-Stacking: A:Y.36 6B9.3: 8 residues within 4Å: Chain A: Y.95 Chain B: P.1, K.32, Y.36, I.64, A.103, W.108, F.113 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.64, B:F.113, B:F.113, B:F.113 Salt bridges: B:K.32 pi-Stacking: B:Y.36 6B9.4: 9 residues within 4Å: Chain B: Y.95 Chain C: P.1, M.2, K.32, Y.36, I.64, A.103, W.108, F.113 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:Y.36, C:Y.36, C:Y.36, C:Y.36, C:I.64, C:I.64, C:F.113, C:F.113, C:F.113 Water bridges: C:K.32, C:K.32, C:K.32, C:Y.36 Salt bridges: C:K.32 pi-Stacking: C:F.113

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: Q.45 Chain B: Q.45 Chain C: V.42, Q.45 4 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: A:Q.45, C:Q.45, C:Q.45, B:Q.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sokolov, A.V. et al., Structural Study of the Complex Formed by Ceruloplasmin and Macrophage Migration Inhibitory Factor. Biochemistry Mosc. (2018)

Release Date

2018-06-06

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

Macrophage migration inhibitory factor

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