- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.1: 6 residues within 4Å:- Chain G: T.17, Y.128, R.131, A.132, M.134, R.135
3 PLIP interactions:3 interactions with chain G- Metal complexes: G:T.17, G:Y.128, G:M.134
MG.5: 4 residues within 4Å:- Chain I: A.175, D.178, S.181, D.205
3 PLIP interactions:3 interactions with chain I- Metal complexes: I:A.175, I:D.178, I:S.181
MG.6: 6 residues within 4Å:- Chain I: D.205
- Chain Y: A.165, H.166, D.168, A.169, S.171
3 PLIP interactions:2 interactions with chain Y, 1 interactions with chain I- Metal complexes: Y:A.165, Y:D.168, I:D.205
MG.8: 6 residues within 4Å:- Chain K: A.165, H.166, D.168, A.169, S.171
- Chain W: D.205
3 PLIP interactions:2 interactions with chain K, 1 interactions with chain W- Metal complexes: K:A.165, K:D.168, W:D.205
MG.10: 6 residues within 4Å:- Chain L: D.222
- Chain V: I.163, W.164, D.166, L.167, S.169
4 PLIP interactions:1 interactions with chain L, 3 interactions with chain V- Metal complexes: L:D.222, V:I.163, V:D.166, V:S.169
MG.11: 5 residues within 4Å:- Chain 0: L.47
- Chain N: R.19, I.163, D.166, S.169
2 PLIP interactions:2 interactions with chain N- Metal complexes: N:I.163, N:S.169
MG.16: 4 residues within 4Å:- Chain W: A.175, D.178, S.181, D.205
1 PLIP interactions:1 interactions with chain W- Metal complexes: W:D.178
MG.19: 7 residues within 4Å:- Chain H: R.19
- Chain Z: R.28, T.192, H.195, I.196, V.198, D.222
2 PLIP interactions:2 interactions with chain Z- Metal complexes: Z:V.198, Z:D.222
- 2 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 3 residues within 4Å:- Chain G: R.120, N.123
- Chain H: Y.69
Ligand excluded by PLIPCL.13: 3 residues within 4Å:- Chain U: R.120, N.123
- Chain V: Y.69
Ligand excluded by PLIP- 4 x GVW: (2~{S})-~{N}-[(2~{S},3~{R})-1-[(4~{a}~{S},8~{a}~{S})-1,2,3,4,4~{a},5,6,7,8,8~{a}-decahydronaphthalen-2-yl]-4-methyl-3,4-bis(oxidanyl)pentan-2-yl]-3-(4-methoxyphenyl)-2-[[(2~{S})-2-(2-morpholin-4-ylethanoylamino)propanoyl]amino]propanamide(Covalent)
GVW.3: 20 residues within 4Å:- Chain H: T.1, R.19, A.20, T.21, N.22, C.31, E.32, K.33, H.35, G.45, A.46, G.47, V.48, A.49, A.52, E.53, G.168
- Chain I: D.125, L.126
- Ligands: MES.4
14 PLIP interactions:11 interactions with chain H, 3 interactions with chain I- Hydrophobic interactions: H:T.1, H:A.20, H:V.48, H:A.52
- Hydrogen bonds: H:T.1, H:T.21, H:T.21, H:G.47, H:G.47, H:G.47, H:A.49, I:D.125, I:D.125
- Salt bridges: I:D.125
GVW.7: 19 residues within 4Å:- Chain K: T.1, R.19, A.20, T.21, V.31, K.33, M.45, G.47, G.48, A.49, C.52, Q.53, S.131, Y.170
- Chain L: D.126, V.128, S.130, E.132
- Ligands: MES.9
16 PLIP interactions:14 interactions with chain K, 2 interactions with chain L- Hydrophobic interactions: K:A.20, K:V.31, K:M.45, K:A.49, K:Q.53
- Hydrogen bonds: K:T.1, K:T.21, K:T.21, K:G.47, K:G.47, K:G.47, K:A.49, K:S.131, K:S.131, L:D.126
- Salt bridges: L:D.126
GVW.14: 19 residues within 4Å:- Chain V: T.1, R.19, A.20, T.21, N.22, C.31, K.33, G.45, A.46, G.47, V.48, A.49, A.52, E.53, G.168
- Chain W: D.125, L.126, C.129
- Ligands: MES.15
14 PLIP interactions:11 interactions with chain V, 3 interactions with chain W- Hydrophobic interactions: V:T.1, V:A.20, V:V.48, V:A.52
- Hydrogen bonds: V:T.1, V:T.21, V:T.21, V:G.47, V:G.47, V:G.47, V:A.49, W:D.125, W:D.125
- Salt bridges: W:D.125
GVW.17: 18 residues within 4Å:- Chain Y: T.1, R.19, A.20, T.21, V.31, K.33, M.45, G.47, G.48, A.49, Q.53, S.131, Y.170
- Chain Z: D.126, V.128, S.130, E.132
- Ligands: MES.18
17 PLIP interactions:15 interactions with chain Y, 2 interactions with chain Z- Hydrophobic interactions: Y:A.20, Y:V.31, Y:V.31, Y:M.45, Y:A.49, Y:Q.53
- Hydrogen bonds: Y:T.1, Y:T.21, Y:T.21, Y:G.47, Y:G.47, Y:G.47, Y:A.49, Y:S.131, Y:S.131, Z:D.126
- Salt bridges: Z:D.126
- 6 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.4: 5 residues within 4Å:- Chain H: G.47, G.128, S.129
- Chain Z: Y.33
- Ligands: GVW.3
3 PLIP interactions:3 interactions with chain H- Hydrogen bonds: H:G.47, H:S.129, H:S.129
MES.9: 8 residues within 4Å:- Chain K: T.1, G.47, M.97, G.98, Y.114, G.130, S.131
- Ligands: GVW.7
3 PLIP interactions:3 interactions with chain K- Hydrogen bonds: K:T.1, K:G.47, K:S.131
MES.12: 7 residues within 4Å:- Chain M: Y.43
- Chain N: T.1, S.46, G.47, L.115, G.128, S.129
6 PLIP interactions:5 interactions with chain N, 1 interactions with chain M- Hydrogen bonds: N:T.1, N:T.1, N:G.47, N:S.129, N:S.129, M:Y.43
MES.15: 6 residues within 4Å:- Chain L: Y.33
- Chain V: T.1, G.47, G.128, S.129
- Ligands: GVW.14
3 PLIP interactions:3 interactions with chain V- Hydrogen bonds: V:G.47, V:S.129
- Water bridges: V:G.128
MES.18: 8 residues within 4Å:- Chain Y: T.1, G.47, S.96, M.97, G.98, G.130, S.131
- Ligands: GVW.17
3 PLIP interactions:3 interactions with chain Y- Hydrogen bonds: Y:G.47, Y:S.131
- Water bridges: Y:Y.114
MES.20: 7 residues within 4Å:- Chain 0: Y.43
- Chain 1: T.1, S.46, G.47, L.115, G.128, S.129
6 PLIP interactions:1 interactions with chain 0, 5 interactions with chain 1- Hydrogen bonds: 0:Y.43, 1:T.1, 1:T.1, 1:G.47, 1:S.129, 1:S.129
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xin, B.T. et al., Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits. J.Med.Chem. (2019)
- Release Date
- 2019-01-30
- Peptides
- Proteasome subunit alpha type-2: AO
Proteasome subunit alpha type-3: BP
Proteasome subunit alpha type-4: CQ
Proteasome subunit alpha type-5: DR
Proteasome subunit alpha type-6: ES
Probable proteasome subunit alpha type-7: FT
Proteasome subunit alpha type-1: GU
Proteasome subunit beta type-10,Proteasome subunit beta type-2: HV
Proteasome subunit beta type-3: IW
Proteasome subunit beta type-4: JX
Proteasome subunit beta type-5: KY
Proteasome subunit beta type-6: LZ
Proteasome subunit beta type-7: M0
Proteasome subunit beta type-1: N1 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AO
OB
BP
PC
CQ
QD
DR
RE
ES
SF
FT
TG
GU
UH
HV
VI
IW
WJ
JX
XK
KY
YL
LZ
ZM
M0
aN
N1
b
SMTL ID : 6hvw.1
Yeast 20S proteasome with human beta2i (1-53) in complex with 43
Proteasome subunit alpha type-2
Toggle Identical (AO)Proteasome subunit alpha type-3
Toggle Identical (BP)Proteasome subunit alpha type-4
Toggle Identical (CQ)Proteasome subunit alpha type-5
Toggle Identical (DR)Proteasome subunit alpha type-6
Toggle Identical (ES)Probable proteasome subunit alpha type-7
Toggle Identical (FT)Proteasome subunit alpha type-1
Toggle Identical (GU)Proteasome subunit beta type-10,Proteasome subunit beta type-2
Proteasome subunit beta type-3
Toggle Identical (IW)Proteasome subunit beta type-4
Toggle Identical (JX)Proteasome subunit beta type-5
Toggle Identical (KY)Proteasome subunit beta type-6
Toggle Identical (LZ)Proteasome subunit beta type-7
Toggle Identical (M0)Proteasome subunit beta type-1
Toggle Identical (N1)Related Entries With Identical Sequence
1fnt.1 | 1g0u.1 | 1g65.1 | 1jd2.1 | 1ryp.1 | 1z7q.1 | 2f16.1 | 2fak.1 | 2gpl.1 | 2zcy.1 | 3bdm.1 | 3d29.1 | 3dy3.1 | 3dy4.1 | 3e47.1 | 3gpj.1 | 3gpt.1 | 3gpw.1 | 3hye.1 | 3jco.1 | 3jcp.1 | 3mg0.1 | 3mg4.1 | 3mg6.1 | 3mg7.1 | 3mg8.1 | 3nzj.1 | 3nzw.1 | 3nzx.1 | 3oeu.1 more...less...3oev.1 | 3okj.1 | 3sdi.1 | 3sdk.1 | 3shj.1 | 3tdd.1 | 3un4.1 | 3un8.1 | 3wxr.1 | 4cr2.1 | 4cr3.1 | 4cr4.1 | 4eu2.1 | 4fzc.1 | 4fzg.1 | 4g4s.1 | 4gk7.1 | 4hnp.1 | 4hrc.1 | 4hrd.1 | 4inr.1 | 4int.1 | 4inu.1 | 4j70.1 | 4jsq.1 | 4jsu.1 | 4jt0.1 | 4lqi.1 | 4ltc.1 | 4nnn.1 | 4nnw.1 | 4no1.1 | 4no6.1 | 4no8.1 | 4no9.1 | 4q1s.1 | 4qby.1 | 4qlq.1 | 4qls.1 | 4qlt.1 | 4qlu.1 | 4qlv.1 | 4qux.1 | 4quy.1 | 4qv0.1 | 4qv1.1 | 4qv3.1 | 4qv4.1 | 4qv5.1 | 4qv6.1 | 4qv7.1 | 4qv8.1 | 4qv9.1 | 4qvl.1 | 4qvm.1 | 4qvn.1 | 4qvp.1 | 4qvq.1 | 4qvv.1 | 4qvw.1 | 4qvy.1 | 4qw0.1 | 4qw1.1 | 4qw3.1 | 4qw4.1 | 4qw5.1 | 4qw6.1 | 4qw7.1 | 4qwf.1 | 4qwg.1 | 4qwi.1 | 4qwj.1 | 4qwk.1 | 4qwl.1 | 4qwr.1 | 4qws.1 | 4qwu.1 | 4qwx.1 | 4qxj.1 | 4qz0.1 | 4qz1.1 | 4qz2.1 | 4qz3.1 | 4qz4.1 | 4qz5.1 | 4qz6.1 | 4qz7.1 | 4qzw.1 | 4qzx.1 | 4qzz.1 | 4r00.1 | 4r02.1 | 4r17.1 | 4r18.1 | 4rur.1 | 4v7o.1 | 4v7o.2 | 4x6z.1 | 4y69.1 | 4y6a.1 | 4y6v.1 | 4y6z.1 | 4y70.1 | 4y74.1 | 4y75.1 | 4y77.1 | 4y78.1 | 4y7w.1 | 4y7x.1 | 4y7y.1 | 4y80.1 | 4y81.1 | 4y82.1 | 4y84.1 | 4y8g.1 | 4y8h.1 | 4y8i.1 | 4y8j.1 | 4y8k.1 | 4y8l.1 | 4y8m.1 | 4y8n.1 | 4y8o.1 | 4y8p.1 | 4y8q.1 | 4y8r.1 | 4y8s.1 | 4y8t.1 | 4y8u.1 | 4y9y.1 | 4y9z.1 | 4ya0.1 | 4ya1.1 | 4ya2.1 | 4ya3.1 | 4ya4.1 | 4ya5.1 | 4ya7.1 | 4ya9.1 | 4z1l.1 | 5a5b.1 | 5ahj.1 | 5bou.1 | 5bxl.1 | 5bxn.1 | 5cgf.1 | 5cgg.1 | 5cgh.1 | 5cgi.1 | 5cz4.1 | 5cz5.1 | 5cz6.1 | 5cz7.1 | 5cz8.1 | 5cz9.1 | 5cza.1 | 5d0s.1 | 5d0t.1 | 5d0v.1 | 5d0w.1 | 5d0x.1 | 5d0z.1 | 5dki.1 | 5dkj.1 | 5fg7.1 | 5fg9.1 | 5fga.1 | 5fgd.1 | 5fge.1 | 5fgf.1 | 5fgg.1 | 5fgh.1 | 5fgi.1 | 5fhs.1 | 5jhr.1 | 5jhs.1 | 5l52.1 | 5l54.1 | 5l55.1 | 5l5a.1 | 5l5b.1 | 5l5d.1 | 5l5e.1 | 5l5f.1 | 5l5h.1 | 5l5i.1 | 5l5j.1 | 5l5o.1 | 5l5p.1 | 5l5q.1 | 5l5r.1 | 5l5s.1 | 5l5t.1 | 5l5u.1 | 5l5v.1 | 5l5w.1 | 5l5x.1 | 5l5y.1 | 5l5z.1 | 5l60.1 | 5l61.1 | 5l62.1 | 5l63.1 | 5l64.1 | 5l65.1 | 5l66.1 | 5l67.1 | 5l68.1 | 5l69.1 | 5l6a.1 | 5l6b.1 | 5l6c.1 | 5lai.1 | 5laj.1 | 5ltt.1 | 5m2b.1 | 5mp9.1 | 5mpa.1 | 5mpb.1 | 5mpc.1 | 5nif.1 | 5wvi.1 | 5wvk.1 | 6ef0.1 | 6ef1.1 | 6ef3.1 | 6fvt.1 | 6fvu.1 | 6fvv.1 | 6fvw.1 | 6fvx.1 | 6fvy.1 | 6g7f.1 | 6g8m.1 | 6g8n.1 | 6gop.1 | 6h39.1 | 6htb.1 | 6htc.1 | 6htd.1 | 6htp.1 | 6htr.1 | 6hub.1 | 6huc.1 | 6huq.1 | 6huu.1 | 6huv.1 | 6hv3.1 | 6hv4.1 | 6hv5.1 | 6hv7.1 | 6hva.1 | 6hvr.1 | 6hvs.1 | 6hvt.1 | 6hvu.1 | 6hvv.1 | 6hvx.1 | 6hvy.1 | 6hw0.1 | 6hw3.1 | 6hw4.1 | 6hw5.1 | 6hw6.1 | 6hw7.1 | 6hw8.1 | 6hw9.1 | 6hwa.1 | 6hwb.1 | 6hwc.1 | 6hwd.1 | 6hwe.1 | 6hwf.1 | 6j2c.1 | 6j2n.1 | 6j2q.1 | 6j2x.1 | 6j30.1 | 6zou.1 | 6zp6.1 | 6zp8.1 | 7ls5.1 | 7ls6.1 | 7lsx.1 | 7o2l.1 | 7qo3.1 | 7qo5.1 | 7qo6.1 | 7tej.1 | 7teo.1 | 8bw1.1 | 8ohz.1 | 8oi1.1 | 8olr.1 | 8rhj.1 | 8rhk.1 | 8rhl.1 | 8rvl.1 | 8rvo.1 | 8rvp.1 | 8rvq.1 | 8t08.1 | 8t0m.1 | 8u6y.1 | 8u7u.1 | 9fst.1 | 9fsv.1 | 9ft0.1 | 9ft1.1 | 9gbk.1