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SMTL ID : 6i2i.1

Refined 13pf Hela Cell Tubulin microtubule (EML4-NTD decorated)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1:

21 residues within 4Å:

Chain A: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228
Ligands: MG.2

20 PLIP interactions:

20 interactions with chain A

Hydrogen bonds: A:Q.11, A:A.12, A:D.98, A:D.98, A:A.99, A:A.100, A:N.101, A:S.140, A:G.144, A:T.145, A:T.145, A:T.145, A:G.146, A:E.183, A:N.206, A:N.206, A:N.228, A:N.228
pi-Stacking: A:Y.224, A:Y.224

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2:	4 residues within 4Å: Chain A: E.71, D.98, T.145 Ligands: GTP.1 No protein-ligand interaction detected (PLIP)
MG.4:	2 residues within 4Å: Chain B: T.143 Ligands: G2P.3 No protein-ligand interaction detected (PLIP)

1 x G2P: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)

G2P.3:

17 residues within 4Å:

Chain A: E.254
Chain B: G.10, Q.11, C.12, Q.15, A.97, N.99, S.138, G.141, G.142, T.143, G.144, N.204, Y.222, L.225, N.226
Ligands: MG.4

15 PLIP interactions:

15 interactions with chain B

Hydrogen bonds: B:Q.11, B:C.12, B:N.99, B:N.99, B:S.138, B:G.142, B:T.143, B:T.143, B:G.144, B:N.204, B:N.204, B:N.226, B:N.226
pi-Stacking: B:Y.222, B:Y.222

1 x TA1: TAXOL(Non-covalent)

TA1.5:

21 residues within 4Å:

Chain B: V.23, D.26, E.27, L.215, D.224, H.227, L.228, A.231, S.234, F.270, P.272, L.273, T.274, S.275, R.276, Q.279, R.318, P.358, R.359, G.360, L.361

13 PLIP interactions:

13 interactions with chain B

Hydrophobic interactions: B:V.23, B:V.23, B:H.227, B:L.228, B:A.231, B:F.270, B:P.272, B:P.358, B:L.361
Hydrogen bonds: B:T.274, B:R.276, B:R.359, B:R.359

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Adib, R. et al., Mitotic phosphorylation by NEK6 and NEK7 reduces the microtubule affinity of EML4 to promote chromosome congression. Sci.Signal. (2019)

Release Date

2019-08-28

Peptides

Tubulin alpha-1B chain: A
Tubulin beta chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Tubulin alpha-1B chain

Tubulin beta chain

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

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Extreme

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