SMTL ID : 6kzv.1

Crystal structure of E.coli DNA gyrase B in complex with 2-oxo-1,2-dihydroquinoline derivative

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x E0F: ~{N}-[2-[[cyclohexyl(methyl)amino]methyl]phenyl]-2-oxidanylidene-1~{H}-quinoline-3-carboxamide(Non-covalent)

E0F.1: 12 residues within 4Å: Chain A: V.43, N.46, A.47, E.50, D.73, R.76, G.77, I.78, P.79, I.94, T.165, V.167 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.43, A:N.46, A:R.76, A:I.78, A:I.78, A:P.79, A:I.94, A:T.165, A:V.167 Hydrogen bonds: A:E.50, A:D.73, A:T.165 pi-Cation interactions: A:R.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ushiyama, F. et al., Lead Identification of 8-(Methylamino)-2-oxo-1,2-dihydroquinoline Derivatives as DNA Gyrase Inhibitors: Hit-to-Lead Generation Involving Thermodynamic Evaluation. Acs Omega (2020)

Release Date

2020-05-06

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA gyrase subunit B

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