SMTL ID : 8zfo.1

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with GW9662 and nTZDpa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

homo-dimer

Ligands

2 x NZA: 5-CHLORO-1-(4-CHLOROBENZYL)-3-(PHENYLTHIO)-1H-INDOLE-2-CARBOXYLIC ACID(Non-covalent)

NZA.1: 14 residues within 4Å: Chain A: I.79, G.82, C.83, R.86, S.87, I.124, L.128, L.131, L.138, I.139, S.140, M.146, F.161, M.162 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.79, A:I.79, A:R.86, A:L.128, A:L.131, A:I.139 Hydrogen bonds: A:S.140 NZA.3: 16 residues within 4Å: Chain B: I.79, G.82, C.83, R.86, A.90, I.124, L.128, L.131, L.138, I.139, S.140, E.141, M.146, L.151, M.162 Ligands: GW9.2 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.79, B:R.86, B:L.128, B:L.131, B:I.139 Hydrogen bonds: B:S.140, B:E.141

1 x GW9: 2-chloro-5-nitro-N-phenylbenzamide(Non-covalent)

GW9.2: 12 residues within 4Å: Chain B: F.80, C.83, Q.84, H.121, I.124, Y.125, L.128, F.161, K.165, H.247, L.251 Ligands: NZA.3 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.80, B:Q.84, B:I.124, B:Y.125, B:L.128, B:L.251 pi-Cation interactions: B:K.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shang, J. et al., Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma. Elife (2024)

Release Date

2024-08-07

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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