SMTL ID : 9j77.1

Cryo-EM structure of CRL2-FEM1B (dimer 1)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: C.41, C.44, C.56, H.70 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.41, C:C.44, C:C.56, C:H.70 ZN.2: 4 residues within 4Å: Chain C: C.30, C.33, H.68, C.71 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.30, C:C.33, C:H.68, C:C.71 ZN.3: 4 residues within 4Å: Chain C: C.63, H.65, C.82, W.89 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.63, C:H.65, C:C.82 ZN.4: 4 residues within 4Å: Chain H: C.41, C.44, C.56, H.70 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.41, H:C.44, H:C.56, H:H.70 ZN.5: 4 residues within 4Å: Chain H: C.30, C.33, H.68, C.71 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.30, H:C.33, H:H.68, H:C.71 ZN.6: 4 residues within 4Å: Chain H: C.63, H.65, C.82, D.85 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.63, H:H.65, H:C.82, H:D.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., TOM20-Driven E3 Ligase Recruitment Regulates Mitochondrial Dynamics Through PLD6. Nat.Chem.Biol. (2025)

Release Date

2025-04-09

Peptides

Elongin-C: AE
Elongin-B: BF
E3 ubiquitin-protein ligase RBX1, N-terminally processed: CH
Cullin-2: DJ
Protein fem-1 homolog B: GI
Poly-UNK: KL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

E
C

B
H

F
D

C
I

H
E

D
B

J
A

G
J

I
F

K
K

L
L

Elongin-C

Elongin-B

E3 ubiquitin-protein ligase RBX1, N-terminally processed

Cullin-2

Protein fem-1 homolog B

Poly-UNK

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