SMTL ID : 6rey.1

Human 20S-PA200 Proteasome Complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

2 x IHP: INOSITOL HEXAKISPHOSPHATE(Covalent)

IHP.1: 14 residues within 4Å: Chain 2: K.156, K.1213, K.1216, H.1219, K.1221, K.1271, Y.1286, K.1346, R.1350, R.1388, K.1391, H.1392, S.1434, R.1435 23 PLIP interactions: 23 interactions with chain 2 Hydrogen bonds: 2:Y.1286, 2:Y.1286, 2:S.1434, 2:S.1434 Salt bridges: 2:K.156, 2:K.156, 2:K.1213, 2:K.1216, 2:K.1216, 2:K.1216, 2:H.1219, 2:K.1221, 2:K.1221, 2:K.1271, 2:K.1271, 2:K.1346, 2:K.1346, 2:R.1350, 2:R.1388, 2:K.1391, 2:K.1391, 2:H.1392, 2:R.1435 IHP.3: 14 residues within 4Å: Chain 3: K.156, K.1213, K.1216, H.1219, K.1221, K.1271, Y.1286, K.1346, R.1350, R.1388, K.1391, H.1392, S.1434, R.1435 23 PLIP interactions: 23 interactions with chain 3 Hydrogen bonds: 3:Y.1286, 3:Y.1286, 3:S.1434, 3:S.1434 Salt bridges: 3:K.156, 3:K.156, 3:K.1213, 3:K.1216, 3:K.1216, 3:K.1216, 3:H.1219, 3:K.1221, 3:K.1221, 3:K.1271, 3:K.1271, 3:K.1346, 3:K.1346, 3:R.1350, 3:R.1388, 3:K.1391, 3:K.1391, 3:H.1392, 3:R.1435

2 x K0W: [(1~{S},2~{R},3~{R},4~{S},5~{S},6~{R})-2-[oxidanyl(phosphonooxy)phosphoryl]oxy-3,4,5,6-tetraphosphonooxy-cyclohexyl] phosphono hydrogen phosphate(Non-covalent)

K0W.2: 8 residues within 4Å: Chain 2: E.31, Y.34, K.128, K.129, W.915, K.922, K.932, R.943 11 PLIP interactions: 11 interactions with chain 2 Hydrogen bonds: 2:Y.34, 2:Y.34 Salt bridges: 2:K.128, 2:K.129, 2:K.129, 2:K.129, 2:K.922, 2:K.922, 2:K.932, 2:R.943, 2:R.943 K0W.4: 8 residues within 4Å: Chain 3: E.31, Y.34, K.128, K.129, W.915, K.922, K.932, R.943 12 PLIP interactions: 12 interactions with chain 3 Hydrogen bonds: 3:Y.34, 3:Y.34 Salt bridges: 3:K.128, 3:K.129, 3:K.129, 3:K.129, 3:K.922, 3:K.922, 3:K.932, 3:K.932, 3:R.943, 3:R.943

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toste Rego, A. et al., Characterization of Fully Recombinant Human 20S and 20S-PA200 Proteasome Complexes. Mol.Cell (2019)

Release Date

2019-09-04

Peptides

Proteasome subunit alpha type-6: AO
Proteasome subunit alpha type-2: BP
Proteasome subunit alpha type-4: CQ
Proteasome subunit alpha type-7: DR
Proteasome subunit alpha type-5: ES
Proteasome subunit alpha type-1: FT
Proteasome subunit alpha type-3: GU
Proteasome subunit beta type-6: HV
Proteasome subunit beta type-7: IW
Proteasome subunit beta type-3: JX
Proteasome subunit beta type-2: KY
Proteasome subunit beta type-5: LZ
Proteasome subunit beta type-1: M0
Proteasome subunit beta type-4: N1
Proteasome activator complex subunit 4: 23

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O
O

B
B

P
P

C
C

Q
Q

D
D

R
R

E
E

S
S

F
F

T
T

G
G

U
U

H
H

V
V

I
I

W
W

J
J

X
X

K
K

Y
Y

L
L

Z
Z

M
M

0
a

N
N

1
b

2
c

3
d

Proteasome subunit alpha type-6

Proteasome subunit alpha type-2

Proteasome subunit alpha type-4

Proteasome subunit alpha type-7

Proteasome subunit alpha type-5

Proteasome subunit alpha type-1

Proteasome subunit alpha type-3

Proteasome subunit beta type-6

Proteasome subunit beta type-7

Proteasome subunit beta type-3

Proteasome subunit beta type-2

Proteasome subunit beta type-5

Proteasome subunit beta type-1

Proteasome subunit beta type-4

Proteasome activator complex subunit 4

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