SMTL ID : 6ru6.1 (1 other biounit)

Crystal structure of Casein Kinase I delta (CK1d) in complex with monophosphorylated p63 PAD1P peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.1: 11 residues within 4Å: Chain A: S.19, I.25, A.38, K.40, M.84, E.85, L.86, L.87, L.137, I.150, D.151 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.85, A:L.87, A:D.151 Water bridges: A:S.90 Salt bridges: A:K.40

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: N.145, Y.288, F.290, N.293 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.288, A:N.293

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: P.89, M.138, G.139, G.144, W.292 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.144 Water bridges: A:N.293 EDO.4: 6 residues within 4Å: Chain A: C.98, K.101, D.291, M.294, L.295 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.98, A:D.291 EDO.5: 5 residues within 4Å: Chain A: F.97, C.98, S.99, L.295 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.98 EDO.6: 5 residues within 4Å: Chain A: E.119, D.267, Y.268, S.269, R.272 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.267, A:D.267, A:S.269, A:R.272 EDO.7: 4 residues within 4Å: Chain A: R.159, R.194, D.263, K.265 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.159, A:R.194, A:R.194, A:K.265 EDO.8: 7 residues within 4Å: Chain A: E.119, H.122, S.123, Y.158, R.194, K.265, Y.268 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.119, A:Y.158, A:Y.158, A:R.194, A:Y.268 EDO.9: 4 residues within 4Å: Chain A: S.269, R.272, Q.273, R.276 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.272, A:Q.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gebel, J. et al., p63 uses a switch-like mechanism to set the threshold for induction of apoptosis. Nat.Chem.Biol. (2020)

Release Date

2020-05-13

Peptides

Casein kinase I isoform delta: A
Tumor protein 63: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Casein kinase I isoform delta

Tumor protein 63

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