SMTL ID : 7p7f.2 (3 other biounits)

Crystal structure of phosphorylated pT220 Casein Kinase I delta (CK1d), conformation 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.129, K.156, K.173, E.191 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.129, A:K.156, A:K.173 SO4.2: 4 residues within 4Å: Chain A: R.180, Q.216, G.217, K.226 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.217 Water bridges: A:R.180, A:W.215, A:W.215, A:Q.216, A:Q.216, A:L.218 Salt bridges: A:R.180, A:K.226 SO4.3: 3 residues within 4Å: Chain A: S.269, R.272, R.276 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.269, A:R.276 Salt bridges: A:R.272

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain A: R.15, K.16 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.15, A:K.16 Water bridges: A:G.14 EDO.5: 4 residues within 4Å: Chain A: I.53, K.56, I.57, F.126 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain A: P.89, M.138, G.144, W.292, N.293 No protein-ligand interaction detected (PLIP) EDO.7: 7 residues within 4Å: Chain A: E.119, H.122, S.123, Y.158, R.194, K.265, Y.268 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.119, A:R.194, A:R.194, A:Y.268 Water bridges: A:R.159 EDO.8: 3 residues within 4Å: Chain A: R.194, D.263, K.265 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.194, A:R.194, A:D.263 EDO.9: 3 residues within 4Å: Chain A: Q.273, R.276, H.280 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.273

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.10: 15 residues within 4Å: Chain A: I.17, G.18, S.19, G.20, G.23, I.25, A.38, K.40, M.84, E.85, L.86, L.87, L.137, I.150, D.151 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.85, A:L.87 Water bridges: A:K.40, A:S.90, A:D.134, A:D.151, A:D.151 Salt bridges: A:K.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cullati, S.N. et al., Kinase domain autophosphorylation rewires the activity and substrate specificity of CK1 enzymes. Mol.Cell (2022)

Release Date

2022-04-13

Peptides

Casein kinase I isoform delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Casein kinase I isoform delta

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