SMTL ID : 7qra.1 (3 other biounits)

Crystal structure of CK1 delta in complex with VN725

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.180, Q.216, G.217, K.226 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.217 Salt bridges: A:R.180, A:K.226 SO4.2: 3 residues within 4Å: Chain A: S.123, R.159, K.265 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.122 Salt bridges: A:R.159, A:K.265 SO4.3: 3 residues within 4Å: Chain A: R.129, K.156, K.173 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.129 Salt bridges: A:R.129, A:K.156, A:K.173

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain A: T.29, E.36 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.29 EDO.5: 4 residues within 4Å: Chain A: I.53, K.56, I.57, F.126 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.53 EDO.6: 3 residues within 4Å: Chain A: S.269, R.272, R.276 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.272, A:R.276

1 x EYI: 4-[3-cyclohexyl-5-(4-fluorophenyl)imidazol-4-yl]-1~{H}-pyrrolo[2,3-b]pyridine(Non-covalent)

EYI.7: 12 residues within 4Å: Chain A: I.17, I.25, A.38, K.40, Y.58, P.68, M.82, M.84, E.85, L.86, L.87, I.150 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.17, A:I.25, A:I.25, A:A.38, A:K.40, A:I.150 Hydrogen bonds: A:E.85, A:L.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nemec, V. et al., Discovery of Potent and Exquisitely Selective Inhibitors of Kinase CK1 with Tunable Isoform Selectivity. Angew.Chem.Int.Ed.Engl. (2023)

Release Date

2023-01-18

Peptides

Casein kinase I isoform delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase I isoform delta

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