SMTL ID : 6ru8.3 (3 other biounits)

Crystal structure of Casein Kinase I delta (CK1d) in complex with triple phosphorylated p63 PAD3P peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: I.17, G.18, S.19, G.20, I.25, A.38, K.40, E.54, Y.58, M.84, E.85, L.86, L.87, D.134, L.137, I.150, D.151 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.58, A:E.85, A:L.87, A:D.151 Water bridges: A:G.20, A:D.151 Salt bridges: A:K.40, A:K.40

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: R.12, L.13, G.14, L.27, G.28, T.29, E.36 Ligands: EDO.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.12, A:R.12, A:T.29 EDO.3: 4 residues within 4Å: Chain A: R.12, T.29, E.36 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.12 EDO.4: 5 residues within 4Å: Chain A: G.23, D.24, Y.26, L.41, Y.79 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.24, A:Y.26, A:Y.26 Water bridges: A:C.43 EDO.5: 4 residues within 4Å: Chain A: I.17, L.86, L.87, G.88 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.87 EDO.6: 3 residues within 4Å: Chain A: D.30, I.31, G.34 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.34 EDO.7: 5 residues within 4Å: Chain A: P.89, M.138, G.139, G.144, W.292 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.139 Water bridges: A:N.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gebel, J. et al., p63 uses a switch-like mechanism to set the threshold for induction of apoptosis. Nat.Chem.Biol. (2020)

Release Date

2020-05-13

Peptides

Casein kinase I isoform delta: A
Tumor protein 63: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
G

Casein kinase I isoform delta

Tumor protein 63

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