SMTL ID : 6ru8.4 (3 other biounits)

Crystal structure of Casein Kinase I delta (CK1d) in complex with triple phosphorylated p63 PAD3P peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: I.17, G.18, S.19, G.20, I.25, A.38, K.40, E.54, Y.58, M.84, E.85, L.86, L.87, D.134, L.137, I.150, D.151 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:E.54, A:Y.58, A:Y.58, A:E.85, A:L.87, A:D.151, A:D.151 Water bridges: A:G.20, A:G.20, A:S.21, A:K.40 Salt bridges: A:K.40, A:K.40

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: P.238, I.239, E.240, N.255 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.239, A:E.240, A:E.240, A:N.255 EDO.3: 3 residues within 4Å: Chain A: N.255, R.258, S.259 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.255 EDO.4: 7 residues within 4Å: Chain A: R.12, L.13, G.14, L.27, G.28, T.29, E.36 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.12, A:R.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gebel, J. et al., p63 uses a switch-like mechanism to set the threshold for induction of apoptosis. Nat.Chem.Biol. (2020)

Release Date

2020-05-13

Peptides

Casein kinase I isoform delta: A
Tumor protein 63: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
H

Casein kinase I isoform delta

Tumor protein 63

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