SMTL ID : 6s14.1

Crystal Structure of DYRK1A with small molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.69, K.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.70 Salt bridges: A:K.69 SO4.2: 3 residues within 4Å: Chain A: K.140, R.176, S.177 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.177, A:S.177, A:S.177 Water bridges: A:K.140, A:K.140, A:A.178 Salt bridges: A:K.140 SO4.3: 4 residues within 4Å: Chain A: R.201, R.204, E.242 Ligands: SO4.5 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.201 Salt bridges: A:R.201, A:R.204 SO4.4: 4 residues within 4Å: Chain A: N.20, G.44, S.45, K.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.20 Water bridges: A:S.45 Salt bridges: A:K.67 SO4.5: 5 residues within 4Å: Chain A: N.241, E.242, V.243, K.269 Ligands: SO4.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.242, A:V.243 Water bridges: A:K.269, A:K.269 Salt bridges: A:K.269 SO4.6: 2 residues within 4Å: Chain A: K.101, R.102 5 PLIP interactions: 5 interactions with chain A Water bridges: A:E.57, A:K.101, A:R.102, A:R.102 Salt bridges: A:R.102

1 x KQW: ~{N}-cyclopropyl-~{N}-methyl-4-pyrazolo[1,5-b]pyridazin-3-yl-pyrimidin-2-amine(Non-covalent)

KQW.7: 15 residues within 4Å: Chain A: I.41, G.42, F.46, V.49, A.62, K.64, V.98, F.114, E.115, M.116, L.117, S.118, L.170, V.182, D.183 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.46, A:V.49, A:F.114, A:V.182 Hydrogen bonds: A:K.64, A:L.117, A:D.183 Water bridges: A:F.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sorrell, F.J. et al., Kinase Scaffold Repurposing in the Public Domain. To be published

Release Date

2019-06-26

Peptides

Dual specificity tyrosine-phosphorylation-regulated kinase 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity tyrosine-phosphorylation-regulated kinase 1A

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