SMTL ID : 6s1i.3 (3 other biounits)

Crystal Structure of DYRK1A with small molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.140, R.176, S.177 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.177, A:S.177 Salt bridges: A:K.140, A:R.176 SO4.2: 2 residues within 4Å: Chain A: R.201, R.204 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.201, A:R.204

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 5 residues within 4Å: Chain A: L.73, Q.77, V.80, H.103, L.110 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.77, A:Q.77 PG4.4: 3 residues within 4Å: Chain A: D.38, K.51, W.60 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.51

1 x KR8: ~{N}-methyl-~{N}-phenyl-4-pyrazolo[1,5-b]pyridazin-3-yl-pyrimidin-2-amine(Non-covalent)

KR8.5: 13 residues within 4Å: Chain A: I.41, F.46, V.49, A.62, K.64, F.114, E.115, M.116, L.117, S.118, L.170, V.182, D.183 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.46, A:V.49, A:V.49, A:A.62, A:F.114, A:L.170, A:V.182 Hydrogen bonds: A:L.117, A:D.183 Water bridges: A:K.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Henderson, S.H. et al., Mining Public Domain Data to Develop Selective DYRK1A Inhibitors. Acs Med.Chem.Lett. (2020)

Release Date

2019-06-26

Peptides

Dual specificity tyrosine-phosphorylation-regulated kinase 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Dual specificity tyrosine-phosphorylation-regulated kinase 1A

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