SMTL ID : 6uwy.2 (3 other biounits)

DYRK1A bound to a harmine derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

monomer

Ligands

1 x QKG: 4-(7-methoxy-1-methyl-9H-beta-carbolin-9-yl)butanamide(Non-covalent)

QKG.1: 18 residues within 4Å: Chain A: I.41, F.46, V.49, A.62, K.64, E.79, V.98, F.114, E.115, M.116, L.117, S.118, Y.119, N.120, D.123, L.170, V.182, D.183 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.46, A:A.62, A:F.114, A:L.117, A:V.182, A:D.183 Hydrogen bonds: A:K.64, A:L.117, A:S.118, A:N.120, A:N.120, A:D.183

3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 4 residues within 4Å: Chain A: D.38, K.51, W.60, M.116 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.39, A:K.51 PG4.3: 4 residues within 4Å: Chain A: A.71, F.72, Q.75, S.186 No protein-ligand interaction detected (PLIP) PG4.4: 1 residues within 4Å: Chain A: K.298 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, K. et al., Synthesis and Biological Validation of a Harmine-Based, Central Nervous System (CNS)-Avoidant, Selective, Human beta-Cell Regenerative Dual-Specificity Tyrosine Phosphorylation-Regulated Kinase A (DYRK1A) Inhibitor. J.Med.Chem. (2020)

Release Date

2020-02-12

Peptides

Dual specificity tyrosine-phosphorylation-regulated kinase 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Dual specificity tyrosine-phosphorylation-regulated kinase 1A

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