SMTL ID : 6sam.1

Structure of human butyrylcholinesterase in complex with 1-(2,3-dihydro-1H-inden2-yl)piperidin-3-yl N-phenyl carbamate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

3 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 6 residues within 4Å: Chain A: Y.237, N.241, N.245, L.249, F.278, P.281 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.245, A:L.249 NAG-NAG-FUC.2: 2 residues within 4Å: Chain A: R.14, N.57 No protein-ligand interaction detected (PLIP) NAG-NAG-FUC.3: 4 residues within 4Å: Chain A: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.336

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.4: 5 residues within 4Å: Chain A: N.106, N.188, K.190, S.191, K.476 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.188, A:S.191, A:K.476, A:N.188

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 6 residues within 4Å: Chain A: W.82, G.115, G.116, Y.128, E.197 Ligands: L3H.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.198 Water bridges: A:G.116 Salt bridges: A:E.197 pi-Cation interactions: A:W.82

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: W.231, V.233, T.234, E.238, R.242, S.287, V.288 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.234, A:E.238, A:R.242, A:R.242, A:V.288 GOL.8: 7 residues within 4Å: Chain A: M.16, L.18, L.29, Y.61, W.98, D.129, K.131 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.98, A:D.129, A:K.131

1 x L3H: [(3~{S})-1-(2,3-dihydro-1~{H}-inden-2-yl)piperidin-1-ium-3-yl] ~{N}-phenylcarbamate(Non-covalent)

L3H.7: 15 residues within 4Å: Chain A: D.70, W.82, G.116, G.117, T.120, S.198, W.231, L.286, V.288, A.328, F.329, Y.332, F.398, H.438 Ligands: DMS.5 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.231, A:L.286, A:V.288, A:A.328, A:F.329, A:Y.332, A:F.398 Hydrogen bonds: A:P.285 Salt bridges: A:D.70 pi-Stacking: A:W.231, A:W.231

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.9: 2 residues within 4Å: Chain A: N.256, E.259 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.256 NAG.10: 4 residues within 4Å: Chain A: R.465, K.469, E.482, N.485 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.469, A:E.482 Hydrogen bonds: A:R.465, A:N.485

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.11: 4 residues within 4Å: Chain A: Q.486, S.487, T.488, T.508 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.470, A:T.488, A:T.488, A:T.508, A:T.508, A:T.508 SO4.12: 4 residues within 4Å: Chain A: Q.316, G.413, N.414, N.415 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.316, A:N.414, A:N.415

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kosak, U. et al., N-alkylpiperidine carbamates as potential anti-Alzheimer's agents. Eur.J.Med.Chem. (2020)

Release Date

2020-04-29

Peptides

Cholinesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cholinesterase

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