SMTL ID : 6sb0.1

cryo-EM structure of mTORC1 bound to PRAS40-fused active RagA/C GTPases

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 5.50 Å

Oligo State

hetero-2-2-2-2-2-2-mer

Ligands

2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 16 residues within 4Å: Chain D: K.15, S.18, G.19, K.20, T.21, S.22, T.36, R.37, G.40, A.41, T.42, G.64, G.65, K.128, S.163, I.164 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:S.18, D:G.19, D:K.20, D:T.21, D:S.22, D:T.36, D:R.37, D:T.42, D:G.65, D:K.128, D:I.164 GTP.3: 18 residues within 4Å: Chain I: K.15, S.16, G.17, S.18, G.19, K.20, T.21, S.22, T.36, R.37, L.39, A.41, T.42, G.64, G.65, K.128, S.163, I.164 12 PLIP interactions: 12 interactions with chain I Hydrogen bonds: I:G.17, I:S.18, I:G.19, I:K.20, I:T.21, I:S.22, I:T.36, I:R.37, I:T.42, I:G.65, I:K.128, I:I.164

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 11 residues within 4Å: Chain E: L.69, R.70, R.71, S.72, G.73, K.74, S.75, S.76, K.179, S.219, I.220 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:R.71, E:S.72, E:G.73, E:K.74, E:S.75, E:S.76, E:K.179 GDP.4: 11 residues within 4Å: Chain J: L.69, R.70, R.71, S.72, G.73, K.74, S.75, S.76, K.179, S.219, I.220 7 PLIP interactions: 7 interactions with chain J Hydrogen bonds: J:R.71, J:S.72, J:G.73, J:K.74, J:S.75, J:S.76, J:K.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anandapadamanaban, M. et al., Architecture of human Rag GTPase heterodimers and their complex with mTORC1. Science (2019)

Release Date

2019-10-16

Peptides

mTOR,Serine/threonine-protein kinase mTOR,mTOR,Serine/threonine-protein kinase mTOR: AB
Target of rapamycin complex subunit LST8: CH
Ras-related GTP-binding protein A: DI
Ras-related GTP-binding protein C: EJ
Regulatory-associated protein of mTOR: FK
Proline-rich AKT1 substrate 1: GL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

H
H

D
C

I
I

E
D

J
J

F
Y

K
N

G
T

L
O

mTOR,Serine/threonine-protein kinase mTOR,mTOR,Serine/threonine-protein kinase mTOR

Target of rapamycin complex subunit LST8

Ras-related GTP-binding protein A

Ras-related GTP-binding protein C

Regulatory-associated protein of mTOR

Proline-rich AKT1 substrate 1

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