SMTL ID : 6sim.1

SAD structure of Hen Egg White Lysozyme recovered by inverse beam geometry data collection and univariate analysis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: Q.75, I.76, N.77, W.81, A.125, W.126 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.77, A:A.125 EDO.2: 5 residues within 4Å: Chain A: R.79, W.80, G.89, S.90, R.91 No protein-ligand interaction detected (PLIP) EDO.3: 3 residues within 4Å: Chain A: R.23, A.140, W.141 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.23

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 3 residues within 4Å: Chain A: W.80, W.81, D.119 No protein-ligand interaction detected (PLIP) ACT.5: 2 residues within 4Å: Chain A: E.53, N.62 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.53, A:E.53 Water bridges: A:N.62, A:N.62, A:D.70

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 5 residues within 4Å: Chain A: S.78, C.82, N.83, S.90, R.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.82, A:S.90

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 3 residues within 4Å: Chain A: K.51, F.56, W.141 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: N.83, P.97 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: R.91, N.92 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: H.33, D.105, I.106 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain A: N.83, G.85, R.86, T.87, S.90 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain A: S.42, G.44, Q.139, I.142 Ligand excluded by PLIP CL.13: 1 residues within 4Å: Chain A: Y.41 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain A: D.36, N.37, S.42, L.43 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Bonete, M.J. et al., Bayesian machine learning improves single-wavelength anomalous diffraction phasing. Acta Crystallogr.,Sect.A (2019)

Release Date

2019-11-06

Peptides

Lysozyme C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme C

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