SMTL ID : 6giq.1

Saccharomyces cerevisiae respiratory supercomplex III2IV

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-2-2-2-2-2-2-2-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
2 x 6PH: (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate(Non-covalent)
6 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)(Covalent)
2 x 8PE: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate(Non-covalent)
1 x CN5: (5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate(Non-covalent)
2 x UQ6: 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL(Non-covalent)
2 x 7PH: (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate(Non-covalent)
2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
2 x PCF: 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE(Non-covalent)
2 x 9PE: (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate(Non-covalent)
1 x CN3: (2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate(Non-covalent)
1 x CU: COPPER (II) ION(Non-covalent)
2 x HEA: HEME-A(Non-covalent)
1 x CUA: DINUCLEAR COPPER ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Rathore, S. et al., Cryo-EM structure of the yeast respiratory supercomplex. Nat. Struct. Mol. Biol. (2019)
Release Date
2019-01-02
Peptides
Cytochrome b-c1 complex subunit 1, mitochondrial: AJ
Cytochrome b-c1 complex subunit 2, mitochondrial: BK
Cytochrome b: CL
Cytochrome c1, heme protein, mitochondrial: DM
Cytochrome b-c1 complex subunit Rieske, mitochondrial: EN
Cytochrome b-c1 complex subunit 6: FO
Cytochrome b-c1 complex subunit 7: GP
Cytochrome b-c1 complex subunit 8: HQ
Cytochrome b-c1 complex subunit 9: IR
Cytochrome b-c1 complex subunit 10: ST
Cytochrome c oxidase subunit 1: U
Cytochrome c oxidase subunit 2: V
Cytochrome c oxidase subunit 3: W
Cytochrome c oxidase subunit 4, mitochondrial: X
Cytochrome c oxidase polypeptide 5A, mitochondrial: Y
Cytochrome c oxidase subunit 6, mitochondrial: Z
Cytochrome c oxidase subunit 7: 0
Cytochrome c oxidase polypeptide VIII, mitochondrial: 1
Cytochrome c oxidase subunit 7A: 2
Cytochrome c oxidase subunit 6B: 3
Cytochrome c oxidase subunit 6A, mitochondrial: 4
Unknown Cox subunit: 5
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
J
L
B
B
K
M
C
C
L
N
D
D
M
O
E
E
N
P
F
F
O
Q
G
G
P
R
H
H
Q
S
I
I
R
T
S
U
T
V
U
a
V
b
W
c
X
d
Y
e
Z
f
0
g
1
h
2
i
3
j
4
k
5
m
Membrane
We predict this structure to be a membrane protein.

Cytochrome b-c1 complex subunit 1, mitochondrial

Toggle Identical (AJ)

Cytochrome b-c1 complex subunit 2, mitochondrial

Toggle Identical (BK)

Cytochrome b

Toggle Identical (CL)

Cytochrome c1, heme protein, mitochondrial

Toggle Identical (DM)

Cytochrome b-c1 complex subunit Rieske, mitochondrial

Toggle Identical (EN)

Cytochrome b-c1 complex subunit 6

Cytochrome b-c1 complex subunit 7

Toggle Identical (GP)

Cytochrome b-c1 complex subunit 8

Toggle Identical (HQ)

Cytochrome b-c1 complex subunit 9

Cytochrome b-c1 complex subunit 10

Cytochrome c oxidase subunit 1

Cytochrome c oxidase subunit 2

Cytochrome c oxidase subunit 3

Cytochrome c oxidase subunit 4, mitochondrial

Cytochrome c oxidase polypeptide 5A, mitochondrial

Cytochrome c oxidase subunit 6, mitochondrial

Cytochrome c oxidase subunit 7

Cytochrome c oxidase polypeptide VIII, mitochondrial

Cytochrome c oxidase subunit 7A

Cytochrome c oxidase subunit 6B

Cytochrome c oxidase subunit 6A, mitochondrial

Unknown Cox subunit

Related Entries With Identical Sequence

2ibz.1 | 3cx5.1 | 3cxh.1 | 3j5q.1 | 4cc8.1 | 4pd4.1 | 4v9j.1 | 4v9j.2 | 4v9k.1 | 4v9k.2 | 4v9l.1 | 4v9l.2 | 4v9m.1 | 4v9m.2 | 4w29.1 | 4w29.2 | 5lqx.1 | 6hu9.1 | 6j3y.1 | 6j3z.1 | 6j40.22 | 6j40.45 | 6lk8.1 | 6t0b.1 | 6t15.1 | 6w6h.1 | 6ymx.1 | 6zdb.1