SMTL ID : 6y4w.1

Crystal structure of p38 in complex with SR69

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x O8T: 5-azanyl-~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-(cyclohexylamino)-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]-1-phenyl-pyrazole-4-carboxamide(Non-covalent)

O8T.1: 22 residues within 4Å: Chain A: Y.36, V.39, A.52, K.54, E.72, L.75, L.76, M.79, I.85, T.107, H.108, L.109, M.110, G.111, A.112, I.142, H.149, I.167, L.168, D.169, F.170, G.171 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:A.52, A:K.54, A:L.75, A:L.76, A:L.76, A:I.85, A:T.107, A:M.110, A:I.142, A:I.167, A:F.170, A:F.170 Hydrogen bonds: A:E.72, A:E.72, A:T.107, A:T.107, A:M.110, A:D.169, A:D.169 pi-Cation interactions: A:K.54

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: Q.129, N.279, L.281, A.307, Y.308, Q.311 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.279, A:N.279 Water bridges: A:Q.311 EDO.3: 3 residues within 4Å: Chain A: T.219, L.223, V.274 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.219, A:R.221 EDO.4: 1 residues within 4Å: Chain A: L.239 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.238, A:R.238, A:R.238 EDO.5: 5 residues within 4Å: Chain A: K.234, L.237, R.238, L.263, M.266 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.234 EDO.6: 5 residues within 4Å: Chain A: D.295, K.296, R.297, I.298, Q.302 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.297, A:Q.302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rohm, S. et al., Selective targeting of the alpha C and DFG-out pocket in p38 MAPK. Eur.J.Med.Chem. (2020)

Release Date

2020-03-04

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

Related Entries With Identical Sequence