SMTL ID : 6yk7.1

Crystal structure of p38 in complex with SR43

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x OU2: 5-azanyl-~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-(ethylamino)-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]-1-phenyl-pyrazole-4-carboxamide(Non-covalent)

OU2.1: 21 residues within 4Å: Chain A: Y.36, V.39, A.52, K.54, E.72, L.76, I.85, T.107, H.108, L.109, M.110, G.111, A.112, D.113, I.142, H.149, I.167, L.168, D.169, F.170, G.171 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:A.52, A:K.54, A:L.76, A:L.76, A:I.85, A:T.107, A:M.110, A:I.142, A:I.167 Hydrogen bonds: A:E.72, A:E.72, A:T.107, A:T.107, A:M.110, A:D.169, A:D.169

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Q.326, S.327, E.329, S.330 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.326, A:E.329, A:S.330, A:S.330 EDO.3: 2 residues within 4Å: Chain A: R.74, E.345 5 PLIP interactions: 5 interactions with chain A Water bridges: A:Y.70, A:R.74, A:K.77, A:E.345, A:S.348 EDO.4: 6 residues within 4Å: Chain A: M.79, K.80, G.86, L.87, L.88, H.108 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.79, A:H.108 Water bridges: A:L.87, A:L.87 EDO.5: 7 residues within 4Å: Chain A: H.200, L.247, K.250, L.292, D.293, S.294, D.295 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.294, A:D.295 Water bridges: A:E.193, A:E.193 EDO.6: 7 residues within 4Å: Chain A: Q.129, N.279, L.281, A.307, Y.308, A.310, Q.311 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.279, A:N.279, A:A.310, A:Q.311 Water bridges: A:Q.129, A:Q.129 EDO.7: 3 residues within 4Å: Chain A: K.122, L.218, T.219 No protein-ligand interaction detected (PLIP) EDO.8: 3 residues within 4Å: Chain A: K.268, N.270, E.287 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.268, A:N.270 Water bridges: A:E.287 EDO.9: 1 residues within 4Å: Chain A: D.332 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rohm, S. et al., Selective targeting of the alpha C and DFG-out pocket in p38 MAPK. Eur.J.Med.Chem. (2020)

Release Date

2020-04-15

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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