SMTL ID : 6y4x.1

Crystal structure of p38 in complex with SR72

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: M.110, G.111, A.158, N.160, E.164, K.166 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.111, A:N.160 Water bridges: A:E.164, A:L.165 EDO.2: 3 residues within 4Å: Chain A: K.140, E.318, V.320 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.140, A:E.318 Water bridges: A:V.320 EDO.3: 5 residues within 4Å: Chain A: V.90, F.91, V.346, I.347, F.349 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.347 EDO.4: 6 residues within 4Å: Chain A: N.27, S.29, A.41, A.42, F.43, R.50 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.50 EDO.5: 4 residues within 4Å: Chain A: Y.70, F.328, R.331, L.341 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.331 EDO.6: 3 residues within 4Å: Chain A: R.331, D.332, L.333 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.331, A:R.331, A:D.332, A:D.332 EDO.7: 5 residues within 4Å: Chain A: L.196, W.198, I.230, A.256, Y.259 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.198

1 x O8Q: 5-azanyl-~{N}-[[4-[[(2~{S})-1-[2-(4-chlorophenyl)ethylamino]-4-cyclohexyl-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]-1-phenyl-pyrazole-4-carboxamide(Non-covalent)

O8Q.8: 23 residues within 4Å: Chain A: V.31, Y.36, V.39, A.52, R.68, E.72, L.75, L.76, M.79, I.85, T.107, H.108, L.109, M.110, G.111, H.149, D.151, I.167, L.168, D.169, F.170, G.171, L.172 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:V.31, A:V.31, A:A.52, A:L.75, A:L.76, A:L.76, A:I.85, A:I.85, A:T.107, A:M.110, A:F.170, A:L.172 Hydrogen bonds: A:E.72, A:T.107, A:T.107, A:M.110, A:D.169, A:D.169 pi-Stacking: A:Y.36 pi-Cation interactions: A:K.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rohm, S. et al., Selective targeting of the alpha C and DFG-out pocket in p38 MAPK. Eur.J.Med.Chem. (2020)

Release Date

2020-03-04

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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