SMTL ID : 7be5.1

Crystal structure of MAP kinase p38 alpha in complex with inhibitor SR276

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: L.223, F.224, L.235, R.238, L.239, V.274 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.235, A:R.238 EDO.2: 5 residues within 4Å: Chain A: R.221, T.222, L.223, R.238 Ligands: EDO.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.238

1 x TKB: 5-azanyl-~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-[[(3~{R})-1-methylsulfonylpiperidin-3-yl]amino]-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]-1-methyl-pyrazole-4-carboxamide(Non-covalent)

TKB.3: 19 residues within 4Å: Chain A: V.39, A.52, K.54, R.68, E.72, L.75, L.76, M.79, I.85, T.107, H.108, L.109, M.110, H.149, I.167, L.168, D.169, F.170, G.171 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:A.52, A:L.75, A:L.76, A:L.76, A:I.85, A:T.107, A:D.169, A:F.170 Hydrogen bonds: A:E.72, A:E.72, A:T.107, A:T.107, A:M.110, A:D.169, A:D.169 Salt bridges: A:E.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rohm, S. et al., Development of a Selective Dual Discoidin Domain Receptor (DDR)/p38 Kinase Chemical Probe. J.Med.Chem. (2021)

Release Date

2021-03-03

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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