SMTL ID : 6ydg.1

X-ray structure of LPMO

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose

BGC-BGC-BGC-BGC.1: 13 residues within 4Å: Chain A: H.1, N.28, H.66, N.67, A.75, S.77, H.78, H.147, E.148, R.159, Y.203 Ligands: CU.2, CL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.148, A:R.159, A:R.159, A:N.28, A:Y.164, A:Y.164 Water bridges: A:Y.203, A:A.75

1 x CU: COPPER (II) ION(Non-covalent)

CU.2: 5 residues within 4Å: Chain A: H.1, H.78, Q.162, Y.164 Ligands: BGC-BGC-BGC-BGC.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.78, A:Y.164, H2O.1

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: N.33, T.35, S.36, P.37, Y.153 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.153 Hydrogen bonds: A:N.33, A:T.35

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: H.1, H.147, Q.162 Ligands: BGC-BGC-BGC-BGC.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tandrup, T. et al., Oligosaccharide Binding and Thermostability of Two Related AA9 Lytic Polysaccharide Monooxygenases. Biochemistry (2020)

Release Date

2020-09-16

Peptides

Auxiliary activity 9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Auxiliary activity 9

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