SMTL ID : 7nin.1

X-ray crystal structure of LsAA9A - CinnamtanninB1 soak

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.1, H.78, Q.162, Y.164 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.78, A:Y.164, H2O.4

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: N.33, T.35, S.36, P.37, Y.153 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.153 Hydrogen bonds: A:N.33, A:T.35, A:Y.153 Water bridges: A:S.36

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: A.56, H.131, S.175, D.176 Ligand excluded by PLIP CL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: A.121, A.227, Q.228 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: V.31, K.32, N.33 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: S.126, G.224, S.225 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: W.218, S.219 Ligand excluded by PLIP

1 x UFK: Cinnamtannin B1(Non-covalent)

UFK.9: 12 residues within 4Å: Chain A: R.23, V.47, V.48, P.49, K.50, S.51, A.89, N.92, D.136, Q.169, T.171 Ligands: ACT.11 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.47, A:A.89 Hydrogen bonds: A:R.23, A:A.89, A:D.136, A:D.136, A:T.171 Water bridges: A:R.23, A:S.51, A:S.51, A:S.51, A:Y.137, A:T.171, A:T.171

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.10: 3 residues within 4Å: Chain A: N.19, D.44, R.46 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.46 Salt bridges: A:R.46 ACT.11: 1 residues within 4Å: Ligands: UFK.9 No protein-ligand interaction detected (PLIP) ACT.12: 3 residues within 4Å: Chain A: A.221, L.222, G.223 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.221 ACT.13: 3 residues within 4Å: Chain A: H.79, I.202, Y.203 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.203 Salt bridges: A:H.79 ACT.14: 5 residues within 4Å: Chain A: I.202, Y.203, T.204, T.205, P.206 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.203 ACT.15: 5 residues within 4Å: Chain A: D.70, H.122, Q.228, D.231, S.233 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.228, A:Q.228, A:S.233 Water bridges: A:A.232 Salt bridges: A:H.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tokin, R. et al., Inhibition of lytic polysaccharide monooxygenase by natural plant extracts. New Phytol. (2021)

Release Date

2021-08-18

Peptides

Auxiliary activity 9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Auxiliary activity 9

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