SMTL ID : 7pyu.1

Structure of an LPMO (expressed in E.coli) at 1.49x10^4 Gy

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose

BGC-BGC-BGC.1: 10 residues within 4Å: Chain A: H.1, N.28, H.66, N.67, A.75, S.77, H.78, E.148 Ligands: CU.3, CL.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.77, A:S.77, A:S.77, A:H.78, A:E.148

1 x BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.2: 6 residues within 4Å: Chain A: E.103, D.104, A.105, Y.106, S.216, V.217 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.105, A:Y.106, A:Y.106

1 x CU: COPPER (II) ION(Non-covalent)

CU.3: 6 residues within 4Å: Chain A: H.1, H.78, Q.162, Y.164 Ligands: BGC-BGC-BGC.1, CL.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.1, A:H.78, A:Y.164

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: L.3, P.25, N.42, I.165, S.166 Ligand excluded by PLIP CL.5: 7 residues within 4Å: Chain A: H.1, H.78, H.147, Q.162, Y.164 Ligands: BGC-BGC-BGC.1, CU.3 Ligand excluded by PLIP

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 2 residues within 4Å: Chain A: N.107, T.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.107 Water bridges: A:T.109, A:T.109 SO4.7: 2 residues within 4Å: Chain A: W.218, S.219 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.219 SO4.8: 3 residues within 4Å: Chain A: T.192, S.194, T.195 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.192, A:T.192 SO4.9: 4 residues within 4Å: Chain A: P.30, K.32, N.33, Y.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.32, A:N.33 Water bridges: A:P.30

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.10: 4 residues within 4Å: Chain A: A.56, H.131, S.175, D.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.176 Water bridges: A:D.176 Salt bridges: A:H.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tandrup, T. et al., Changes in active-site geometry on X-ray photoreduction of a lytic polysaccharide monooxygenase active-site copper and saccharide binding. Iucrj (2022)

Release Date

2022-08-31

Peptides

Auxiliary activity 9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Auxiliary activity 9

Related Entries With Identical Sequence