SMTL ID : 6ywu.1

Human OMPD-domain of UMPS (K314AcK) in complex with UMP at 1.1 Angstroms resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U5P.1: 15 residues within 4Å: Chain A: S.37, D.39, K.61, H.63, D.92, K.94, M.151, S.152, I.181, P.197, Q.210, Y.212, V.229, G.230, R.231 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.181, A:P.197 Hydrogen bonds: A:S.37, A:D.39, A:K.61, A:H.63, A:S.152, A:S.152, A:S.152, A:Q.210, A:Y.212, A:G.230, A:R.231 Water bridges: A:G.198, A:V.199, A:G.232 Salt bridges: A:R.231

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: R.15 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: T.154, G.209 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.154 Water bridges: A:G.209, A:G.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rindfleisch, S. et al., Ground-state destabilization by electrostatic repulsion is not a driving force in orotidine-5-monophosphate decarboxylase catalysis. Nat Catal (2022)

Release Date

2022-02-23

Peptides

Uridine 5'-monophosphate synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uridine 5'-monophosphate synthase

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